Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq250 684 0.0 >seq250 Length=47047 Score = 684 bits (758), Expect = 0.0 Identities = 768/1022 (75%), Gaps = 4/1022 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| ||||| ||||||||| | ||| | | ||| | |||||||| ||||| ||| Sbjct 1240 TTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTA 1299 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || ||||||||||| | | ||| ||||| ||||||| ||||||| || Sbjct 1300 ATGATTCCTACATTATTAACAGCTACTTC-TGTATTCATCATTGCATTCGTTGCTGCTCC 1358 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || ||| | ||||| || || ||| || || | || || ||||| Sbjct 1359 TCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAA 1418 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||| ||||| ||||| ||| ||||| ||| || || ||| | |||||||||||||| Sbjct 1419 CATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAAT 1478 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| ||| | | || ||||||||||| || ||||| |||| | | | Sbjct 1479 TTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGT 1538 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACA 168848 || ||||| || | || | || |||||||||| | |||||||| ||| | ||| Sbjct 1539 ATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGC-TACC 1597 Query 168849 GACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTG 168908 | |||||||| | ||||||||| |||||| | || || ||||| | || ||| || Sbjct 1598 GTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTG 1657 Query 168909 CAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAA 168968 | |||||| | | ||||| ||||||| || |||||||||||||||||| |||| | Sbjct 1658 CTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTA 1717 Query 168969 TTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATC 169028 ||||||| ||||||||||||||| | ||||||||||| ||||| |||||||| ||||| | Sbjct 1718 TTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACC 1777 Query 169029 CCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATG 169088 | ||||| ||| || || ||| | || ||||||||||||||| || ||||| | Sbjct 1778 CATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACG 1837 Query 169089 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATG 169148 ||||||| ||||| ||| | ||||| | || || ||||| | |||||| ||||||| Sbjct 1838 GTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATG 1897 Query 169149 GTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCG 169208 |||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | Sbjct 1898 GTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTG 1957 Query 169209 GTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 169268 || | ||||| ||||| ||||| |||||||||||||| | |||||||||||| ||| Sbjct 1958 GTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAG 2017 Query 169269 CAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 169328 | | ||||||||| || | |||||||| ||||| | | | || ||||| || | Sbjct 2018 GTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTA 2077 Query 169329 ACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTA 169388 |||| || || || ||||| |||||||| || || || | ||| | ||| | Sbjct 2078 ACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACA 2137 Query 169389 CATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 169448 | |||| ||| | ||||| | || ||| | ||||||||||| |||||||||||||||| Sbjct 2138 CTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACG 2197 Query 169449 CTCACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACAGAGGTTGCTTTAACTGCAC 169508 |||||||||||||| |||||||||| |||| ||| || | ||||| ||||| || | Sbjct 2198 CTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTC 2257 Query 169509 CA 169510 || Sbjct 2258 CA 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564420334662720