Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq250 583 1e-161 seq316 508 7e-139 >seq250 Length=47047 Score = 583 bits (646), Expect = 1e-161 Identities = 743/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| ||||| || ||| | ||| | | ||| | |||||||| |||||| | Sbjct 1240 TTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTA 1299 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||| || || | ||||| | | |||||| |||||||| |||| || ||| Sbjct 1300 ATGATTCCTACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCT 1359 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || ||| | ||||||||||| |||||||| |||| ||||||||| Sbjct 1360 CCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAAC 1419 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| ||| ||||| || || || ||| | ||||||||||| || Sbjct 1420 ATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATT 1479 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| || | |||| || ||||| ||||| ||||| || | | | | Sbjct 1480 TGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTA 1539 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 || ||||| | | ||| | | |||||||| | |||||||||| ||| | Sbjct 1540 TTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGT 1599 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | || ||||| ||| |||| || || || || |||| ||| |||| Sbjct 1600 TTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCT 1659 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || || | ||||| || ||||||||||||||||| ||||||| Sbjct 1660 GTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATT 1719 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| | || |||||||| |||||||||||||||||||| || Sbjct 1720 TCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCA 1779 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 |||||| ||| || || || | ||||| |||||| ||||| || ||||||||| Sbjct 1780 TTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGT 1839 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || |||| || ||| | ||||| | || ||||||||| ||||| ||||| || Sbjct 1840 TCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGT 1899 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||||||||| |||||||||||||| || ||||| || || ||||| |||||||||||| Sbjct 1900 TACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGT 1959 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | || ||||| |||||| |||||||||||| | |||||||||||| ||| Sbjct 1960 CGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGT 2019 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | | || |||||| || | |||||||| ||||| | | | || ||||| || ||| Sbjct 2020 TTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAAC 2079 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGA-TGCTAACGGTAAGATTGTTCCTAC 172718 | || |||||||||||||||||||| || || || || || ||| | || || Sbjct 2080 TTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAA-GGTCGTGTAATTAACAC 2138 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| | ||||| | || ||| |||||||||||||||||||||| | || || Sbjct 2139 TTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGC 2198 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCAACAGTTGCTTTAACAGCACC 172838 |||||||||||||||||| | || |||| || ||| | | ||||| |||||||| || Sbjct 2199 TCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCC 2258 >seq316 Length=14323 Score = 508 bits (562), Expect = 7e-139 Identities = 745/1052 (71%), Gaps = 24/1052 (2%) Strand=Plus/Plus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 || ||||||||| || | || |||||||| |||||||| ||||| || ||||| || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 |||||| | || || || ||||| | || ||| | | ||||| ||| | ||||||| Sbjct 10209 TCTGGTTTATTGCTACTGCCTTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || || ||||| |||||||| |||||| | ||| |||||| | ||||| ||| Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAAC 10328 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 || |||||||| ||||| || || || | | ||||| || | | | ||| | Sbjct 10329 TTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCTTG 10388 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 |||||||| ||||| ||||| ||| | | |||| || | || || || |||| Sbjct 10389 TGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGACT 10448 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 ||| |||| |||||||| | |||||||| |||||||| | |||||||||||||| Sbjct 10449 TTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAGATT 10508 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 ||| ||||||| || | |||||||| ||||| | || || || | ||| | || Sbjct 10509 GCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTGTG 10568 Query 173365 TTCACTAGCA-TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 ||| || || | |||||||| || || |||| || |||||||| || || ||| Sbjct 10569 TTCG-TATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTAG 10627 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || ||||| || || |||||| | | | | |||||| |||| ||||| || ||| || Sbjct 10628 TTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGAC 10687 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 || |||||||| || ||||||||||| || || || || ||||| || ||| ||||||| Sbjct 10688 GTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTGC 10747 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 || |||||||| || || | || || || | ||||| || ||| | Sbjct 10748 TATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAG------------ATGGTGACGC 10795 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | | || || || ||||| ||| ||| || || |||||||| ||| Sbjct 10796 TGCG--------GAC-ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTC 10846 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| | ||||| ||| | || |||||||| || |||||| | || ||||| |||||||| Sbjct 10847 AATGGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAG 10906 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGG 173783 || |||| ||| | |||||||| ||||| || | ||| |||||||| || || || Sbjct 10907 ATGGCTACATTTCTTTATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGG 10966 Query 173784 TATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGC 173843 || ||||| | ||| | || | ||||| || |||||||||||||| || | ||||| Sbjct 10967 CATTGTAGGATTAGCATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGC 11026 Query 173844 AGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 173903 ||||| ||||| || || || || ||||| ||||| ||||| || | || |||||||| Sbjct 11027 CGCAGAGGATCCTGAATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTAT 11086 Query 173904 GAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGT 173963 | ||||||||| | | |||||| || ||||| ||||| |||| ||||| || || Sbjct 11087 TCGTGCATGGATGGCTGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGT 11146 Query 173964 GTTACCAAGAGGTAACGCACTTTAAATAATAA 173995 | ||| | || ||||| |||| |||||||| Sbjct 11147 TCTGCCACGTGGAAACGCCCTTT-AATAATAA 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588029045171040