Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq250 664 0.0 seq316 538 4e-148 >seq250 Length=47047 Score = 664 bits (736), Expect = 0.0 Identities = 765/1027 (74%), Gaps = 2/1027 (0%) Strand=Plus/Plus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||||||| ||||| || || | ||||| | ||| |||||||||| || ||| | Sbjct 1239 TTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATT 1298 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||||| || | || |||| || ||||| |||||| | || ||||| ||||||| Sbjct 1299 AATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGTTGCTGCTC 1357 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || || || || ||||||||||| || |||||||| | | || ||||||| Sbjct 1358 CTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACA 1417 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||| ||||||||||| ||| ||||| ||| || |||||| |||||||||| || | Sbjct 1418 ACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAA 1477 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| || || | || |||||| | || |||||||| | || || | | Sbjct 1478 TTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCG 1537 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 |||| ||||| | | || | | ||||||||| ||||| |||||||| |||| Sbjct 1538 TATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACC 1597 Query 162743 GTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 || | ||||||||||| |||||| || |||| |||||| || |||||||| ||| | | Sbjct 1598 GTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTG 1657 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || |||| || | |||||||| |||||||| | ||||| || |||| Sbjct 1658 CTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTA 1717 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||||||||||| |||| |||| |||||||| ||||| |||||||| ||||| | Sbjct 1718 TTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACC 1777 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | |||||| || ||||| || ||||| || ||||| || || |||||||| ||||||| Sbjct 1778 CATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACG 1837 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| | || || ||| | ||||||| || ||||||| ||| || ||||||| Sbjct 1838 GTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATG 1897 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 ||||||||||||||||||||||||| || || ||||| || || || ||||||||||| | Sbjct 1898 GTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTG 1957 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 ||||||| || ||||||||||| ||||||||||| ||||| | ||||||||| | | Sbjct 1958 GTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAG 2017 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 | |||||| ||||| || || ||||| || | | || ||||| ||||| || | Sbjct 2018 GTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTA 2077 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 || | || ||||||||||||||||| || | |||| | || |||||||| | |||| Sbjct 2078 ACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACA 2137 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||| || | | |||||||| || ||||||||||||||||| ||||| || | Sbjct 2138 CTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACG 2197 Query 163343 CTCACAACTTCCCACTTGACCTGGCAGCTGCCGAGTCAACTCCTGTTGCTCTTACCGCAC 163402 |||||||||||||| | ||| | || ||| || || |||||||| | || || | Sbjct 2198 CTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTC 2257 Query 163403 CTACTGT 163409 | |||| Sbjct 2258 CAGCTGT 2264 >seq316 Length=14323 Score = 538 bits (596), Expect = 4e-148 Identities = 744/1032 (72%), Gaps = 12/1032 (1%) Strand=Plus/Plus Query 163615 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGG 163674 || ||||||||| | | ||||||||| | ||| | || ||||| || || || |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 163675 TCTGGATTACTACTTCTTCCCACTGCT--TATATGGCAATTGGTGGCTGGCTTACTGGTA 163732 ||||| ||| | || || || |||| ||| | || | ||||| |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 163733 CAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTA 163792 | ||||| || || || ||||| || ||||| | |||| ||| || | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 163793 ATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTC 163852 | || | ||||| || || ||||| || ||| | |||||| || ||| || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 163853 -TCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGG 163911 | ||||| || || ||||| ||||||||| | ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 163912 AATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGGCAATTTGA 163970 | |||| | || | || || || |||| || || ||||| || || || || ||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 163971 ACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030 |||| | || | || | ||||| || || || |||||||| || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 164031 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCC 164090 ||| ||||| || ||| | || || ||| | || ||| | |||||||| || ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 164091 ATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTG 164150 |||||| || || || ||||| ||||| | |||||| | || || ||||||||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 164151 GACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATC 164210 ||| || || || |||||||||||||| || |||||||| || || || || || ||| Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 164211 TGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACAC 164270 |||||| || || | || ||||||||||| || | ||||||||| || || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 164271 CTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCG 164330 |||| || ||| | | || || ||||| || ||||| ||||| || |||||||| Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 164331 CTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 164390 || ||||| || || || |||||||| ||||||||||| | ||||| ||||| || || Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 164391 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCT 164450 ||||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATT 10984 Query 164451 CAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTT 164510 ||| | | ||||| || |||||| ||| || ||||||| ||||| |||||||| || Sbjct 10985 AAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATT 11044 Query 164511 CGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACC 164570 || || |||||||| || || || ||||||||||||| | ||||||||| | || | Sbjct 11045 TGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGC 11104 Query 164571 AGTTGACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAAT 164628 | || |||| || || ||| ||| | |||||||| || || ||||| | || || Sbjct 11105 ACAAGATCAGCCTCATGAAAAC--TTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 164629 GCGCTTTAATAA 164640 || ||||||||| Sbjct 11163 GCCCTTTAATAA 11174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557562993022800