Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq250 636 2e-177 >seq250 Length=47047 Score = 636 bits (704), Expect = 2e-177 Identities = 749/1011 (74%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 |||||||| ||||| || ||| | || | |||||||||||||| | ||||||||| Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | ||||||| || |||||| | |||||| | ||||| ||||| || ||| Sbjct 1309 ACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGAT 1368 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 || || || ||| | || |||||||||||||||||| | || ||||||||||| |||||| Sbjct 1369 ATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCT 1428 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||||||| | || ||||| || || || | ||||||||||| || |||||||| Sbjct 1429 GGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCT 1488 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 || | | ||||| ||| | ||||| ||||| | || || | | || ||||| Sbjct 1489 GCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTT 1548 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | | ||| || || ||| || | ||||||||||| ||| | ||||||||| Sbjct 1549 TTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATG 1608 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | ||||||||| |||||| | ||| || || || | ||||| ||| |||||| | Sbjct 1609 CGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTG 1668 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 | || || | ||||| || |||||||||| |||||| | || || ||||| ||| Sbjct 1669 ATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACA 1728 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 ||||||| |||| |||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct 1729 TTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAA 1788 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 |||||||| |||||||| || ||||| || | ||| ||| |||||||||||||| || Sbjct 1789 TTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTA 1848 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || ||| | ||||| | || |||||||| | |||||| ||||| |||||||||||| Sbjct 1849 ACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTC 1908 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 || ||||| || ||||| || ||||| || |||||||| |||||||||||||| | || Sbjct 1909 GGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATA 1968 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 |||||||| || |||||||||||| | |||||||||||| | | || || Sbjct 1969 TTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCA 2028 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 ||| | |||| ||| ||| | || ||| |||||||||||||| ||| | || ||| Sbjct 2029 GTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGT 2088 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 |||||||||||||| ||||| || ||| ||| || ||| |||||||| || Sbjct 2089 TTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGAT 2148 Query 216203 GTTCTTAACAGAGCAGGACTT-GGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTT 216261 | ||||| | || |||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 2149 ATCATTAACCGTGC-TAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 2207 Query 216262 CCCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCACC 216312 |||||||||||| || ||| |||||| ||| ||||| ||||| || || Sbjct 2208 CCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCC 2258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745053529050720