Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq250 717 0.0 seq316 489 2e-133 >seq250 Length=47047 Score = 717 bits (794), Expect = 0.0 Identities = 782/1036 (75%), Gaps = 2/1036 (0%) Strand=Plus/Plus Query 181785 TGGGAACAATTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTT 181844 ||||||| |||||| ||||||||| || | || ||| | ||| ||||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 181845 GGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGT 181903 ||||| | ||||| || || | || | || || ||||| |||||| |||| ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 181904 AGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTA 181963 || || ||||| || ||||| || |||||||| ||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 181964 TGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTT 182023 ||||||||||| ||||||||||||||| | ||| || || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 182024 CTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 182083 ||||||||| ||||||||||| || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 182084 ACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACT 182143 || | || || ||||| | | || | ||||||||| |||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 182144 TTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGC 182203 | ||||| |||||||||||||| |||||| ||| |||| |||||||||||| || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 182204 AGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCC 182263 ||| ||||||||||||| |||| || | |||||||| ||||| |||| ||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 182264 CCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCT 182323 | || || || || |||||||||| ||| | || |||||||||||||| |||||||| Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 182324 TATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGC 182383 ||||| || |||||| || ||||| || |||||||| ||||| || || || ||||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 182384 AATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACA 182443 ||||||||||| | || || ||| | ||||||| || ||||| | || || Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 182444 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGG 182503 |||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 182504 CTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTT 182563 ||||| |||||||| || |||||||| || ||||||||||| ||||| | ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 182564 CTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGAT 182623 |||| | | | |||||| ||||| || || ||||| || | | ||| || || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 182624 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 182683 ||| || ||| | || ||||||||||||||||| || | |||| | || |||||||| Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 182684 CCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGA 182743 ||||||||||||| ||| | | ||||||||| | |||||||||||||||||||| Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 182744 GCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGAGTCAACTCCTGTTGCACT 182803 ||||||||| |||||||||||| |||| | || ||| ||| || ||||||||| | Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 182804 TGTAGCACCTTCTGTT 182819 ||| || ||||| Sbjct 2250 AACAGCTCCAGCTGTT 2265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 20487 TGGCGGAATTGGTAGACGCGCTAGGTTTAGGTTCTAGTGAGGTAACTCGTGGAGGTTCAA 20546 ||| |||||||||||||||||||| ||||||||||||||||||| |||||| |||||| Sbjct 13451 TGGTGGAATTGGTAGACGCGCTAGATTTAGGTTCTAGTGAGGTATCTCGTGAGAGTTCAA 13392 Query 20547 GTC 20549 ||| Sbjct 13391 GTC 13389 >seq316 Length=14323 Score = 489 bits (542), Expect = 2e-133 Identities = 732/1029 (71%), Gaps = 10/1029 (1%) Strand=Plus/Plus Query 183175 GGGTGGTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGG 183234 || ||||| ||| | | ||||||||| | || | || || ||||| || | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 183235 TCTGGACTCCTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGTTGGCTTACTGGCA 183292 ||||| | | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 183293 CAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTA 183352 | ||||||| || ||||||||| ||||| | || ||| || | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 183353 ACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTAC 183412 |||| | || || || || || || || ||| | |||||| || ||| | | || Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCT 10386 Query 183413 TTTGGGGTCCTGAGTCTCAAGGGGACTTTCA-ACGCTGGTGCCAACTTGGGGGACTCTGG 183471 | ||||| || || ||||||| || ||||| | | ||||| || | || || || ||| Sbjct 10387 TGTGGGGACCAGAAGCTCAAGGCGA-TTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 183472 AATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGA 183530 | |||| | || | || || || |||| || || ||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTTGA 10504 Query 183531 ACTTGCTCG-CTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 183589 |||| | |||| | ||| | | ||||| || |||||||| || || || ||||| Sbjct 10505 GATTGCAAGACTTG-TGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATAT 10563 Query 183590 CTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCAC 183649 |||| || || ||||| | || ||||| | || || || ||||| ||||| | Sbjct 10564 CTGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTC 10623 Query 183650 CTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACT 183709 ||||||| || || || || ||||||||||| |||| ||| | |||||||| || |||| Sbjct 10624 CTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACT 10683 Query 183710 GGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCA 183769 |||||||||| || |||||||||||||| || |||||||| || || || || || | Sbjct 10684 GGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTAT 10743 Query 183770 GTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACA 183829 ||||||||||||||| || || || ||||| || | ||||||||| || || ||| Sbjct 10744 GTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACA 10803 Query 183830 CATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATC 183889 |||| | || ||| | | |||||| ||||| || ||||| ||||| ||||| || | Sbjct 10804 CATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 183890 GTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTA 183949 |||| ||||||||||| || || ||||| ||| || || | ||| | || ||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 183950 TGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTC 184009 |||||||||| || || | ||| | ||| ||| |||||||| | || | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 184010 TTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAAT 184069 | ||| | | |||||||| |||||| ||| || | ||||| ||||| ||||| |||| Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 184070 TTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCAC 184129 |||| || ||||| || || || || || | || ||||| | ||||||||| | || Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 184130 CTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATG 184189 | ||||| || ||||| || |||||||| ||||||||||| | || | || || | Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 184190 CTCTTTGAT 184198 | |||| || Sbjct 11164 CCCTTTAAT 11172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611672954353200