Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq250 616 2e-171 seq316 569 2e-157 >seq250 Length=47047 Score = 616 bits (682), Expect = 2e-171 Identities = 754/1021 (74%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 164755 TGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTC 164814 ||||| ||| ||| ||||| || ||| | |||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 164815 GGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCAT 164873 ||||| | ||||| || || | | ||||| | ||| || || | ||||||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 164874 CGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTA 164933 |||||||| || || || ||||||||||| |||||||| || || |||||| || | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 164934 CGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTT 164993 |||||||||||| |||||||||||||| |||| |||| || || || ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 164994 CTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCA 165053 ||| || |||||||||||||| | | || || ||||| ||||||||||| |||| Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 165054 GTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 165113 | | || || ||||| | | ||||| ||||||||||||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 165114 GTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGC 165173 ||||| | ||||||||||||||||| || |||| || || || || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 165174 TGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCC 165233 ||| | || || ||| || |||| || | |||||||| || ||||||||||||||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 165234 TCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCT 165293 | | ||||| |||||||| || |||| ||| | || |||||||| || ||||||||||| Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 165294 TATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGC 165353 ||||| || |||||| | || |||||||| ||||| ||||||||||| ||| ||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 165354 TATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCA 165413 |||||| || || || ||||| | |||| || |||||||||| || | Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 165414 GAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGG 165473 ||||| ||||| ||||| || ||||||||||| || |||||||| || ||||| || || Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 165474 GTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTT 165533 ||||| |||||| | || |||||||| || |||||||| || ||||| || ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 165534 CTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCAT 165593 |||| | | |||||| || || ||||| ||||| || || | ||| || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 165594 GGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTC-AGAAC--AA 165650 ||| || ||| | || ||||||||||||||||| ||| | ||||| || | || | Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 165651 AATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCA 165710 ||| | | ||||||||||| | | ||||||||| | ||||||||||||||||| Sbjct 2130 AATTAAC---ACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCA 2186 Query 165711 TGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGCTGCCGAGAGCACT-CCTGTTG 165769 |||||||||||||||||||||||| | ||| | || ||| || | | || ||||||| Sbjct 2187 TGAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGA-ATCTCTACCTGTTG 2245 Query 165770 C 165770 | Sbjct 2246 C 2246 >seq316 Length=14323 Score = 569 bits (630), Expect = 2e-157 Identities = 749/1028 (73%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 166155 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 166214 || ||||| ||| | | || |||||| | || |||| ||||| ||||| | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 166215 TCTGGACTTCTTCTTCTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTCACTGGGA 166272 ||||| | | || || || |||| |||||||| | || || ||||| || || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 166273 CTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAA 166332 ||||||| || || ||||||||||||||| | ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 166333 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTC 166392 |||| | || || |||||||| |||||||| || |||||| || ||| || || ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTA-TTATTC 10385 Query 166393 -TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGG 166451 | ||||| || || |||||||| |||||| || ||||| || | || || |||||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 166452 GCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGA 166510 | ||| | ||| | || || ||||||| ||||| ||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 166511 AATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGC 166570 || || | || || ||| | | || || || || || |||||||| || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 166571 TGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 166630 ||| ||||| || ||| | || || ||| | || ||| | ||||||||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 166631 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTG 166690 ||| || || | || ||||| |||| | | ||| | || || || || ||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 166691 GACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTC 166750 ||| | || ||||| ||||||||||||||||| |||||||| |||||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 166751 TGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATAC 166810 ||| |||||||||| ||| || || || || | | | |||||||||| || | || Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 166811 TTTCAAGGCATTCGACT-CTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACC 166869 || | || || ||| | |||||| |||||||| ||||||||||| |||||||||| Sbjct 10805 ATTTAGAGC-TTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 166870 GCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTA 166929 | | |||||| || || || ||| |||| ||| ||| || || ||| | |||||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 166930 TGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTC 166989 || ||||||| || |||| ||| ||||||||||||| || || ||| | || | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 166990 TCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGT 167049 | || | | |||||||||||||| || || ||||| || || |||||||||||||| | Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 167050 TTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAA 167109 ||||||| |||||||| || || ||||| ||||| || ||||| ||| | |||||||| Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 167110 CTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACG 167169 | ||||| |||||||| | || ||||||| || |||||||| || | || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 167170 CTCTCTAA 167177 | || ||| Sbjct 11164 CCCTTTAA 11171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563639564079360