Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq250 636 2e-177 >seq250 Length=47047 Score = 636 bits (704), Expect = 2e-177 Identities = 758/1024 (74%), Gaps = 12/1024 (1%) Strand=Plus/Plus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||||| |||||||| | ||||| | ||| | |||||||| ||||| || ||||| || Sbjct 1248 TTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCC 1307 Query 169758 ATGTCTATTAGCAGCAGCAAC--CTGCTTT-ATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 | |||| | |||| || ||| || ||| |||| ||| | || ||||| || || Sbjct 1308 ---TACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGT 1364 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 || || ||||| ||| | ||||| || || ||||| || | || ||||||||||| || Sbjct 1365 TGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTAT 1424 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 ||||||||| ||| ||||| ||| || || ||| | |||||||| || |||||||| Sbjct 1425 CTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGA 1484 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 ||| || || |||| |||||||| || |||||||| || | || | | || || Sbjct 1485 AGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACA 1544 Query 169995 CTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGG 170054 ||| | | || | || |||||||||| | |||||||||| ||||||||||| Sbjct 1545 CTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGG 1604 Query 170055 TATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATT 170114 |||||||||||||||| ||| |||| ||||||||||| |||| ||| |||||||| Sbjct 1605 TATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATT 1664 Query 170115 CTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGG 170174 ||| | || || | ||||| || ||||| || || |||||| ||||||| || || Sbjct 1665 CTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGG 1724 Query 170175 TACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCA 170234 |||||| ||||||||| | ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 1725 TACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCA 1784 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 ||| ||||||||| | || || ||| | || ||| || |||||||||||||| Sbjct 1785 CCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACT 1844 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 ||||| ||| | ||||| | || ||||| || || || || |||||||| ||||| Sbjct 1845 AGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAA 1904 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 ||||| |||||||||||||| || ||||||||||| |||||||| ||||||||| | | Sbjct 1905 GTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTT 1964 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 || |||||||||||||| || ||||| |||| |||||||||||| | | | || Sbjct 1965 AATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATG 2024 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 || || ||| | || |||||||| || || | | | || ||||| |||||| | || Sbjct 2025 GCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAA 2084 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGC 170594 ||| || ||||||||||| || | || || | ||| ||| || || ||||| Sbjct 2085 TGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGC 2144 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 || | ||||| | || ||| ||||||||||||| |||||||||||||| || ||||| Sbjct 2145 TGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAA 2204 Query 170655 CTTCCCACTTGACTTGGCAACTGCTGAGACATCTGAA---GTTGCATTAATTGCTCCTTC 170711 ||||||| | ||||| || ||| ||| |||| | |||||||||| ||||| | Sbjct 2205 CTTCCCATTAGACTTAGCGTCTGGTGA---ATCTCTACCTGTTGCATTAACAGCTCCAGC 2261 Query 170712 TGTT 170715 |||| Sbjct 2262 TGTT 2265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582826041201600