Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq250 684 0.0 >seq250 Length=47047 Score = 684 bits (758), Expect = 0.0 Identities = 748/990 (76%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 83970 GACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGC 84029 ||||| | || || |||||||| || |||||||| || ||||| ||||||||||| | Sbjct 2225 GACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCCATACCTAAG 2166 Query 84030 CCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGA 84089 ||||| |||| | ||| ||||| || || | ||||| |||||| || || | | Sbjct 2165 TTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCTGTCAACTACA 2106 Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 || |||||||| || ||||| | ||||| ||||| || ||| | || | Sbjct 2105 GATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGAGATAGATGTT 2046 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 |||||||| || || |||||||| | | ||||| ||||| || |||||| |||||| Sbjct 2045 AACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTG 1986 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || |||||| ||||| || | |||||| ||||| || || ||||||||||| |||||| Sbjct 1985 AAACTAGCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCAACAATGTTATAA 1926 Query 84270 GTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCT 84329 ||||| ||||||||||||||||||||||||||||| || ||||||| || ||||| Sbjct 1925 GTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCA 1866 Query 84330 CGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAAT 84389 ||||||| | |||||| || |||||||| ||||| ||| |||||||| |||||| ||| Sbjct 1865 CGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGAGATCCACCAAAT 1806 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 ||||||||||| || || ||| || || ||||| || |||||||| || || ||||| Sbjct 1805 ACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAAT 1746 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 |||| |||| ||||||| || || || ||||| | ||||| ||||||||||| ||| Sbjct 1745 ACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCT 1686 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 || || | || || | | ||||||||||| ||| |||||||||||||||||| | ||| Sbjct 1685 TGACCAATCGGGTAGATCAAGAATACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCA 1626 Query 84570 ACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGT-- 84627 ||| |||||| ||||||||||| | ||| || ||||||||| ||||||||||||| Sbjct 1625 ACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGTAG 1566 Query 84628 -AAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATAT 84686 |||||| |||| | | ||||| || || | || | || ||||| || ||| Sbjct 1565 CAAGCAA---CACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACCGTTGTAT 1509 Query 84687 AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTA 84746 | ||| ||||| | | || ||||||||||| || ||||| || | |||||||||| | Sbjct 1508 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCA 1449 Query 84747 GAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACT 84806 || ||||| || |||||||| || |||||||| ||||| | | ||||||||| ||| Sbjct 1448 GAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACT 1389 Query 84807 GGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACA 84865 || ||||||||||| |||||||||||||| || ||| ||||||||||||||||||| ||| Sbjct 1388 GGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATGATGAATACA 1329 Query 84866 GACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACG 84925 || ||| || | | || || |||||||| | ||||||||||| | ||| | ||| Sbjct 1328 GA-AGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGATATATAAACG 1270 Query 84926 GTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 ||| | |||| || |||||| ||||| Sbjct 1269 GTTTTCAGTGCTTGTAACCCAAGAGCAGAA 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571252077267120