Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq189 197 1e-44 >seq189 Length=13781 Score = 197 bits (218), Expect = 1e-44 Identities = 327/467 (70%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 552107 CAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA- 552165 |||||| | ||| ||||| | || |||||||||||| | || ||| || | || Sbjct 12072 CAAAGTTGACGAAGTTGTGTTGGTAGGTGGATCTACACGTATACCTGCTGTTAGGGAGTG 12131 Query 552166 TGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTG 552225 ||| ||| | ||| ||| ||| || ||| |||| |||||||| ||||| | || Sbjct 12132 TGTAAAGAAGAT-TTTAAAT---AAAGAACCTAATCAAAGCGTTAATCCTGATGAAGTTG 12187 Query 552226 TTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTAC 552285 |||| |||||| || ||||||||| | | || |||| || | | || | ||| | Sbjct 12188 TTGCGATTGGTGCAGCTGTTCAAGCAGGTGTACTAGCTGGTGAAGTTAAAGATATACTTC 12247 Query 552286 AAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTA 552345 |||| |||||| |||||| ||||| | ||| | |||||| | || || Sbjct 12248 ---------TACT---AGATGTAACTCCTTTATCTTTAGGTGTTGAAACATTAGGTGGAG 12295 Query 552346 TTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTT 552405 | ||||| || |||| ||||||||| |||||||| ||||||||| ||||||| Sbjct 12296 TAATGACAAAGATTATTACTAGAAATACAACTATTCCAACTAAAAAATCAGAAGTATTTT 12355 Query 552406 CTAC-GTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAA 552464 | || | | | |||||||||| | |||| |||||| | || ||||||||||| || Sbjct 12356 CAACAGCAGT-AGATAATCAACCAAATGTTGAAATTCATGTGCTTCAAGGAGAAAGAGAA 12414 Query 552465 TTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCT 552524 || ||||||||||||| || || || |||| ||||| || ||| || ||||| Sbjct 12415 TTTGCTAAAGATAATAAAAGCCTAGGAACATTTAGGTTAGATGGAATTTTACCAGCTCCA 12474 Query 552525 CGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 | | || ||||||||||||||||| |||||||| ||| | ||||| Sbjct 12475 AGAAGTGTGCCGCAAATTGAAGTTACATTCGATATAGATTCTAATGG 12521 Score = 122 bits (134), Expect = 7e-22 Identities = 119/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| ||||| || ||||| |||||||| || || ||| | ||| ||||||| |||| Sbjct 11503 GCAGTGATAACAGTTCCAGCCTATTTTAACGATTCTCAAAGGCAATCTACTAAGAATGCC 11562 Query 550460 GGACGTATTGCTGGACTTA-ATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || || ||||| |||| |||| ||||| || ||||||| ||||| |||||| |||| Sbjct 11563 GGCAAGATAGCTGG-CTTAGATGTACTTCGCATAGTCAATGAGCCTACAGCTGCTTCACT 11621 Query 550519 TGCATATGGACTTGATAAACATAATGATCAA 550549 |||||||||||||||||| | ||| || || Sbjct 11622 AGCATATGGACTTGATAAAAAAAATAATGAA 11652 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 360877 ATTATGTTTAGTTAATTTTCTTTCGCCCTCAAATATTTTAATGCTAACAGTATCTTGATA 360936 ||||| ||||| |||| |||||| || | || | | ||| |||| | ||||| Sbjct 12429 ATTATCTTTAGCAAATTCTCTTTCTCCTTGAAGCACATGAATTTCAACATTTGGTTGATT 12370 Query 360937 ATC-AGTGTCTGTGGAAAATATTTTAGtttttttAGTAGGAATTACTGTATTTCTTGGTA 360995 ||| | || |||| ||||||| || | ||||||||| ||||| ||||||||| | | Sbjct 12369 ATCTACTG-CTGTTGAAAATACTTCTGATTTTTTAGTTGGAATAGTTGTATTTCTAGTAA 12311 Query 360996 TAATTGTAGTCATTTGGCGCTGTAAAGTTTCAACTCCTAACGATAAAGGAGTAATATCTA 361055 |||| | |||||| | ||| |||||||| ||||| ||||||||||| | ||||| Sbjct 12310 TAATCTTTGTCATTACTCCACCTAATGTTTCAACACCTAAAGATAAAGGAGTTACATCTA 12251 Query 361056 ATA 361058 || Sbjct 12250 GTA 12248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029136606086860