Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq250 444 2e-120 >seq250 Length=47047 Score = 444 bits (492), Expect = 2e-120 Identities = 713/1015 (70%), Gaps = 8/1015 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||||||||||| ||||| |||||| | ||| | || ||||| || || | ||||| || Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 25871 TGCTTACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 ||| | |||| ||| | ||| || || |||| ||| | || || || || || || Sbjct 1309 ACATTATTAACAGCTACTTC-TGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGA 1367 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || ||||| |||||| | || || ||| | ||||| ||||| || || || Sbjct 1368 TATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTC 1427 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || || | || ||| || || || | || || ||||| || |||||||| Sbjct 1428 TGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGC 1487 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | ||||||||| ||||||| || || || | || || | || ||||| Sbjct 1488 TGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTT 1547 Query 26110 CTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGA 26167 ||| |||| || || || | ||| || | |||||||||| ||| | |||| Sbjct 1548 TTTACTAGGTGTTGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGCTACCGTTTAGGT 1605 Query 26168 ATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTC 26227 ||| | || ||||| |||||||| | || ||| | | || || || || ||| Sbjct 1606 ATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTC 1665 Query 26228 TTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGT 26287 || | || || | || ||||| || || |||||| |||||| | ||||| |||||| Sbjct 1666 TTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGT 1725 Query 26288 ACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCAT 26347 || || ||||| ||| | ||||||||||| || ||||| || || |||||||||||||| Sbjct 1726 ACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCAC 1785 Query 26348 ATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTG 26407 ||||||||||| || || |||||| |||| ||| |||||||||||| | Sbjct 1786 CAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTA 1845 Query 26408 GTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAA 26466 || |||| || ||| | | ||||| || || | | || || ||||| || || Sbjct 1846 GTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAA 1904 Query 26467 GTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATT 26526 ||| || ||||| ||||| || ||||| ||||| |||||||| || |||||||| | || Sbjct 1905 GTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTT 1964 Query 26527 AATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTG 26586 ||| || || ||||| ||||| || ||| ||||| ||||| ||||| | | | || Sbjct 1965 AATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATG 2024 Query 26587 GCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAA 26646 ||| ||||| || || ||| | |||||||| | | | || ||||| |||||| |||| Sbjct 2025 GCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAA 2084 Query 26647 TGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGC 26706 |||||| ||||| ||||| || ||||| || | || |||| || ||||| Sbjct 2085 TGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGC 2144 Query 26707 TGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAA 26766 |||| | | ||||| |||||| | || | ||||||||||| |||||||| ||||| || Sbjct 2145 TGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAA 2204 Query 26767 CTTTCCACTTGACTTAGCATCATCTGAGTCAACACAAGTTGCACTATCAGCCCCA 26821 ||| ||| | |||||||| || ||| || || |||||| || |||| ||| Sbjct 2205 CTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCCA 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146721148478736