Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq250 580 3e-161 >seq250 Length=47047 Score = 580 bits (642), Expect = 3e-161 Identities = 734/1007 (73%), Gaps = 4/1007 (0%) Strand=Plus/Minus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 ||| ||| ||| |||| ||| | |||||||||||| ||||||||||||||||||||||| Sbjct 2235 AGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTC 2176 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| ||||||| |||||||||| || ||||||||||| | || | || | | Sbjct 2175 CATACCTAAGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCT 2116 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 ||||| || || || |||||||| || || || | ||||| |||||||| || || Sbjct 2115 GTCAACTACAGATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGA 2056 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTG-- 36197 |||| || | ||| || | || ||||| | | | |||||| || || || Sbjct 2055 GATAGATGTTAACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTG--AAGTGAA 1998 Query 36198 CGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 36257 || || || || |||||||| ||||| || | | |||||||| ||||| || ||| Sbjct 1997 CGAGAGTTGTTGAAACTAGCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCA 1938 Query 36258 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGC 36317 ||||||||||| || ||||||||||| ||||| || || |||||||| ||||||| Sbjct 1937 ACAATGTTATAAGTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTT 1878 Query 36318 CCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAA 36377 ||||||||||||| || | ||||| || || |||||||||||| ||||| | Sbjct 1877 TCAGTTGTTTCACGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGA 1818 Query 36378 GCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGT 36437 | |||||| ||||| || |||||||| | ||||| || ||||| || || || || Sbjct 1817 GATCCACCAAATACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGC 1758 Query 36438 TCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCA 36497 || || || || |||| ||| || ||||| || || |||||||| | ||||||||||||| Sbjct 1757 TCAGCTTGGAATACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCA 1698 Query 36498 GAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGG 36557 ||||| || ||||| |||| ||||||| |||||||||||| ||| |||||||| || Sbjct 1697 GAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAATACAGCAGTTGCAGCTGCAACTGGA 1638 Query 36558 GCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGT 36617 || || | || ||| ||||| || | |||||||| | || ||||||||||| | Sbjct 1637 GCAGAGAATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCA 1578 Query 36618 CGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 36677 || |||| ||| | | ||| | | |||||| || || || || | || || Sbjct 1577 CGACCCATGTAGCAAGCAACACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCA 1518 Query 36678 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 36737 ||||| |||||||||||||| | | ||||||||||| |||||||||||||||| ||| Sbjct 1517 CCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCA 1458 Query 36738 ATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCT 36797 || || || ||| | | || |||||||| |||||||| || || ||||| | Sbjct 1457 ATAGCAGCAGAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAA 1398 Query 36798 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATT 36857 || | || || ||||| |||||||| ||||| || ||||| |||||||| |||||||| Sbjct 1397 CCAGCAACTGGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATG 1338 Query 36858 AAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACA 36917 | ||| | | |||||||| | || ||| ||||||| ||| |||||||| || | | Sbjct 1337 ATGAATACAGAAGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGATA 1278 Query 36918 TAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 36964 || | ||||| | || ||||||||||| || |||| |||||| Sbjct 1277 TATAAACGGTTTTCAGTGCTTGTAACCCAAGAGCAGAAACGTTCCCA 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449015048956