Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq250 513 4e-141 >seq250 Length=47047 Score = 513 bits (568), Expect = 4e-141 Identities = 710/990 (72%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 5183 GACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCC 5242 || ||| ||| |||| || | ||||||||||||||| || || || ||||| |||||| Sbjct 2234 GATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCC 2175 Query 5243 ATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTA 5299 ||||| | ||| |||||||| | || ||| ||||||||| || | | ||| ||| Sbjct 2174 ATACCTAAGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCT- 2116 Query 5300 GAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATT 5359 |||||| || || || |||||||| || || || | ||||| |||||||| || | Sbjct 2115 --GTCAACTACAGATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACA 2058 Query 5360 CCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTA 5419 ||||| || | ||| || | || || ||||| | | | |||||| || | | Sbjct 2057 GAGATAGATGTTAACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAA 1998 Query 5420 CGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 5479 || ||||| || |||||||| ||||| || | | |||||||| ||||| || ||| Sbjct 1997 CGAGAGTTGTTGAAACTAGCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCA 1938 Query 5480 ACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGC 5539 ||||||||||| |||||||| ||||| ||||| || || |||||||| ||| | Sbjct 1937 ACAATGTTATAAGTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTT 1878 Query 5540 CCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAA 5599 ||||||||||||| || | |||||| || || || ||||||||| ||| | | Sbjct 1877 TCAGTTGTTTCACGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGA 1818 Query 5600 GCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGT 5659 | |||||| ||||| ||||||||||| | |||||| || ||||| || || || || Sbjct 1817 GATCCACCAAATACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGC 1758 Query 5660 TCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCA 5719 || || |||||||| | ||| ||||| || |||||||| ||||| | ||||||||||||| Sbjct 1757 TCAGCTTGGAATACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCA 1698 Query 5720 CTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGG 5778 ||| || || || || | ||||| | || ||||| | ||| | | || ||||| || Sbjct 1697 GAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAATACAGCAGTTG-CAGCTGCAACTGG 1639 Query 5779 TGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTG 5838 || || |||| || ||||| || ||||| ||||| | ||| ||||||||||| | Sbjct 1638 AGCAGAGAATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTC 1579 Query 5839 GCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCC 5898 || |||| ||| || | ||| | | ||||| || |||| || |||| || Sbjct 1578 ACGACCCATGTAGCAAGCAACACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCC 1519 Query 5899 TCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCC 5958 || ||||| | ||| || || | | || |||||||| || || |||||||| | || Sbjct 1518 ACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACC 1459 Query 5959 AATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGA 6018 ||| || || || || | ||| || || || || |||||||| || || |||| ||| Sbjct 1458 AATAGCAGCAGAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGA 1399 Query 6019 TCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAA 6078 || || || |||||||| || || || || || ||||| || ||||| |||||||| | Sbjct 1398 ACCAGCAACTGGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAAT 1339 Query 6079 TATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCAC 6138 || ||| ||| ||| || ||||| | || || |||||||| ||||||||||| || | Sbjct 1338 GATGAATACAGAAGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGAT 1279 Query 6139 ATAGAGGCGGTTGTTGGTGCTAGTAACCCA 6168 ||| | ||||| | ||||| |||||||| Sbjct 1278 ATATAAACGGTTTTCAGTGCTTGTAACCCA 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152644136480004