Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq250 572 5e-159 >seq250 Length=47047 Score = 572 bits (634), Expect = 5e-159 Identities = 730/1005 (73%), Gaps = 0/1005 (0%) Strand=Plus/Minus Query 25440 AGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 25499 ||| ||| |||| |||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 2235 AGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTC 2176 Query 25500 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 25559 ||| ||||||| |||||||||| || ||||||||||| | || | || | | Sbjct 2175 CATACCTAAGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCT 2116 Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 ||||| || || || |||||||| || || || | ||||| |||||||| || || Sbjct 2115 GTCAACTACAGATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGA 2056 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 |||| || | ||| || | || ||||| | | | |||||| || | ||| Sbjct 2055 GATAGATGTTAACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACG 1996 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 || || || |||||||| ||||| || | | |||||||| ||||| || ||||| Sbjct 1995 AGAGTTGTTGAAACTAGCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCAAC 1936 Query 25740 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 25799 ||||||||| || ||||||||||| ||||| || || |||||||| ||||||| | Sbjct 1935 AATGTTATAAGTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTTTC 1876 Query 25800 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 25859 |||||||||||| || | ||||| || || |||||||||||| ||||| || Sbjct 1875 AGTTGTTTCACGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGAGA 1816 Query 25860 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 25919 |||||| ||||| || |||||||| | ||||| || ||||| || || || || || Sbjct 1815 TCCACCAAATACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGCTC 1756 Query 25920 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 25979 || || || |||| ||| || ||||| || || |||||||| | ||||||||||||||| Sbjct 1755 AGCTTGGAATACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCAGA 1696 Query 25980 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 26039 ||| || ||||| |||| ||||||| |||||||||||| ||| |||||||| || || Sbjct 1695 GAAGCTGCCTTGACCAATCGGGTAGATCAAGAATACAGCAGTTGCAGCTGCAACTGGAGC 1636 Query 26040 TGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCG 26099 || | || ||| ||||| || | ||| |||| | || ||||||||||| | || Sbjct 1635 AGAGAATGCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACG 1576 Query 26100 TCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACC 26159 |||| ||| | | || | | |||||| || || || || | || ||||| Sbjct 1575 ACCCATGTAGCAAGCAACACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACC 1516 Query 26160 GTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 26219 ||| || ||||||||||| | | ||||||||||| |||||||||||||||| ||| || Sbjct 1515 GTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAAT 1456 Query 26220 TGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCC 26279 || ||| || | | || || ||||| |||||||| || || ||||| | || Sbjct 1455 AGCAGCAGAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAACC 1396 Query 26280 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 26339 | || || ||||| |||||||| ||||| || ||||| |||||||| |||||||| | Sbjct 1395 AGCAACTGGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATGAT 1336 Query 26340 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 26399 ||| | | |||||||| | || ||| ||||||| ||| |||||||| || | ||| Sbjct 1335 GAATACAGAAGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGATATA 1276 Query 26400 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | ||||| | || ||||||||||| || |||| |||||| Sbjct 1275 TAAACGGTTTTCAGTGCTTGTAACCCAAGAGCAGAAACGTTCCCA 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151988159959064