Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq148 123 2e-23 >seq148 Length=44851 Score = 123 bits (136), Expect = 2e-23 Identities = 381/579 (66%), Gaps = 18/579 (3%) Strand=Plus/Plus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| ||||| ||||| |||| || |||||||||||||||| || ||| | || Sbjct 22191 GTACACGTGCGCGTCGCCCAACACATGCACAAACTCTCCCGGTTGAAGGCCGACAATATG 22250 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 |||| |||| || || || | |||||||| ||||| || || || || | ||||| Sbjct 22251 CGCCACCATGATGGTCAGCAGCGCATAGCTGGCAATGTTGAAAGGCACACCCAAACCCAT 22310 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGC--TCACGTAAAACTG 29999 ||| | || | |||||| | ||| ||||| ||||| ||| | || |||||||||| || Sbjct 22311 GTCGCAAGAGCGCTGGTACATCTGGCACGACAGCTCGCCGCTGGCATTCACGTAAAATTG 22370 Query 30000 ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 | |||||||||| || | ||||| | | | || ||||| || | Sbjct 22371 GGCGAACATGTGGCACGGTGGCAAGGCCATTTGCGATAGCGCGGCCGGATTCCACGCACT 22430 Query 30060 CACGATGATGCGCCTGTC-TTCTGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGC 30117 || || ||||| | ||| ||| || |||| | | | | || | | |||||| Sbjct 22431 CATGACCATGCGGCGGTCATTCGGGTTTGTGC--GCAGCGTATCAATCACACCCTGCAGC 22488 Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 |||||||| || ||| | |||||| || | ||| || ||| ||| || || || Sbjct 22489 TGATCCACGCCTTGCCCGGCGTAGTCGGCGTGCTTGTTCGAGTATGTTGCGCCAAAGTGG 22548 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAGCCC 30234 | |||||| || || || ||||| |||||||| ||| || | |||| | || Sbjct 22549 CGCCACTGAAAGCCATAGACCGGACCCAGGTCGCCCGGCTCAC---GCTCAGTCAGACCG 22605 Query 30235 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCCTTCTCGG 30292 | |||| ||| || | || ||||| ||||||| || | |||| | | | | Sbjct 22606 AGACTATCCAGAAACTCGCGCGAGCCGTTCCCGTCCCAAATGTGGATACCGCGT--GCCG 22663 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 ||| |||| || ||| || | || |||||||||| |||||| ||||| | Sbjct 22664 CGAGTAGGTTGGCGTCCGTGCTGCCGCGCACAAACCACAGCATTTCCTCCGCGACGCCGC 22723 Query 30353 TCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTGT 30390 ||| || || | ||| || ||||| || |||||| ||| Sbjct 22724 GCCAGAACACGCGCTTTGTGGTGAGCAGCGGGAAAGTGT 22762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408602590198622