Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1200 107 1e-18 seq2751 95.1 9e-15 seq970 87.8 1e-12 >seq1200 Length=24482 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48535 CGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAAT 48594 || |||| || | || |||| |||||| || || ||| ||| || ||||| ||||| | Sbjct 18664 CGCCGCCTCCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGT 18723 Query 48595 CAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654 | || || | || |||| || | |||||| || || || |||| ||||| ||||| | Sbjct 18724 CCGAGAGCGTGCGCCCGTCCTCTAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGATCTG 18783 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 || | |||||||||||| |||||| || || | | | || || | || Sbjct 18784 GCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGGACT 18843 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| | ||| ||||| || ||||||| || || ||||| |||||||| Sbjct 18844 CCACCTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 18895 >seq2751 Length=18403 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 48620 CTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAAT 48679 |||||| ||||| || ||||| ||||| || |||| || | |||||||||||| ||| Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 48680 CTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCC 48739 ||| || ||| | | | | || |||| ||||||||| | ||| || || ||||| Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 48740 CGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCAT 18257 >seq970 Length=23808 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || | || ||| || || || || || || || || |||| Sbjct 22515 AGACGCAGAACCAAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCGT 22574 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || ||||| |||| ||||| || || | || | ||| ||| Sbjct 22575 CCGTCCTCCAGCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCC 22634 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | | || || | ||| ||||||| ||| Sbjct 22635 TTGTCTTGAATCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTG 22694 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || ||||||||||| Sbjct 22695 ATTGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 22732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923606971522