Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq1962 242 7e-59 >seq1962 Length=79148 Score = 242 bits (268), Expect = 7e-59 Identities = 504/743 (68%), Gaps = 33/743 (4%) Strand=Plus/Plus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||||||||||| | ||||||||| ||| | | || || || | |||||||| Sbjct 51199 TACCCCTTGACGCACAGAATCTGCTTGAGCGTGTAGGCAATGTCGACGAGGTCTTCCTGC 51258 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| || ||||| || ||| ||||||||| || | ||| || Sbjct 51259 GCACCCATGACTAGTTCAATGGGCTTATATGCCGCCGGCGTCTCATCAACCACACCCAAA 51318 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTC 168449 ||||| || ||||||||||||| ||||| ||||| | | | | || |||| Sbjct 51319 TCCTTTCGACACTCGACGCCCTGTGTGGCCAGCTCGTGCACTGCGACTGTGAATTTCTTC 51378 Query 168450 TTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCA 168509 || || |||| || |||| || |||||||||||||| ||||| | | | | | Sbjct 51379 TTGGCAGCCGTGCGAGACAAGAGCCGGCCGGCGCCGTGACTGCAAGTGTTATACGAATGT 51438 Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCG 168569 | || |||||| |||||||| || || |||||| |||||||| ||||||||||| ||| Sbjct 51439 GGGTTGCCCTTTCCGCGCACAATAAAGCTCTTGGCCCCCATCGAGCCCGGAATGATCCCG 51498 Query 168570 --AGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGA 168627 ||| | | ||||||| || || ||||| | || | | || ||||| |||| Sbjct 51499 TACATTCCTTCATCTGCGC--GTACGGCCCCCTTTCTCGTGATCATGAGCTCCTCTCCGA 51556 Query 168628 AGTGGCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGA 168687 | ||| || | || ||||| ||||| || | || || || |||| ||||| Sbjct 51557 AATGGTTCTCGATAGACACATAGTTATGGTGGCACTCAACTGCAAACTGGTCGTCCTTGA 51616 Query 168688 ACGCCGGCACGAACTCCCG-GATCGCCTTG-----AGCACGCGGACCATCATCATGTCGC 168741 | |||| | ||| | | || ||| ||| ||||| | ||||||| | | | Sbjct 51617 AGTCCGGTAGACACTTCAGCGAGCGCATTGCGCCCAGCACCTGCGCCATCATGAGCTTAC 51676 Query 168742 GGTTCAGGCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCT 168801 | || | |||||| || | |||||||| ||||| | |||||||||||||||| || Sbjct 51677 GATTTAAGCGCGCAAATTGCTGCGCCCACTGTACGGCATGCATGTAGTCGTCGAAATGCT 51736 Query 168802 GC-TCGCCCACTTCGAGCCACGCGAGGTTCTCGTCCTGCGGG---CGCACATGGCGCTTT 168857 || || || |||| || |||| || | || ||| || || |||| || ||| | Sbjct 51737 GCGTCCCCTTCTTCAAG-TACGCCAGATCCTGATCCGGCAGGTTTCGCA---GGTGCTGT 51792 Query 168858 GCCAGGGCGTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGC 168917 || | |||||||| ||| || ||||| | ||||| |||||| || || | Sbjct 51793 CGCATATCTTTCTTCGCAAGCTCAATAAAGTACGTACCGATTCGGTTGCCCACCCCCCTT 51852 Query 168918 GATCCCGAGTGCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATG 168977 || || ||||| ||||||||||| || || |||||||| ||| || Sbjct 51853 GAGCCGGAGTGAAGCATCACCCAAACATT-------ATCGTCCCC------ATCTAGA-- 51897 Query 168978 CAGATTTCGATGAAGTGGTTGCC 169000 |||| ||| || ||||||||||| Sbjct 51898 CAGACTTCAATAAAGTGGTTGCC 51920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895732652000880