Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1962 156 6e-33 >seq1962 Length=79148 Score = 156 bits (172), Expect = 6e-33 Identities = 384/570 (67%), Gaps = 12/570 (2%) Strand=Plus/Plus Query 139559 CTTGGCGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTC 139618 |||||| || ||||| |||| | ||| || |||||||| ||| | | |||| | Sbjct 51378 CTTGGCAGCCGTGCGAGACAAGAGCCGGCCGGCGCCGTGACTGCAAGTGTTATACGAATG 51437 Query 139619 GGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCC 139678 | ||||||||| |||||||| || || |||||||||||||||||| || ||||| || Sbjct 51438 TGGGTTGCCCTTTCCGCGCACAATAAAGCTCTTGGCCCCCATCGAGCCCGGAATGATCCC 51497 Query 139679 GAACTGGTCCTTC-TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGA 139737 | || |||||| | || || || ||||| | || | | || | ||| ||| Sbjct 51498 GTAC-ATTCCTTCATCTGCGCGTACGGCCCCCTTTCTCGTGATCATGAGCTCCTCTCCGA 51556 Query 139738 AGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGA 139797 | ||| ||| | || ||||| |||||||| | || || || ||| ||||| Sbjct 51557 AATGGTTCTCGATAGACACATAGTTATGGTGGCACTCAACTGCAAACTGGTCGTCCTTGA 51616 Query 139798 AGGGCGGCAGGCCC--GAG-GCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGC 139854 || ||| || | | || | |||||| ||| |||| ||| | |||||| | || | Sbjct 51617 AGTCCGGTAGACACTTCAGCGAGCGCATTGCGCCCAGCACCTGCGCCATCATGAGCTTAC 51676 Query 139855 GGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCG 139914 | || | ||||| || | ||| |||| ||||| | || |||||||| ||| | | Sbjct 51677 GATTTAAGCGCGCAAATTGCTGCGCCCACTGTACGGCATGCATGTAGTCGTCGAAATGCT 51736 Query 139915 GC-TCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGC 139973 || || |||| | || |||| || |||| || || | || | || | | ||| Sbjct 51737 GCGTCCCCTT-CTTCAAGTACGCCAGATCCTGATCCGGCAGGTTTCGCAGGTGCTGTCGC 51795 Query 139974 AGCATCATCTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCG 140032 | ||| | ||| || ||| || ||| |||| ||||| |||||| || || | Sbjct 51796 A-TATC--TTTCTTCGCAAGCTCAATAAAG-TACGTACCGATTCGGTTGCCCACCCCCCT 51851 Query 140033 CGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAA 140092 ||||| ||||| ||||||||||| || | |||| | || || ||||| || || || Sbjct 51852 TGAGCCGGAGTGAAGCATCACCCAAACATTATCGTCCCCATCTAGACAGACTTCAATAAA 51911 Query 140093 GTGGTTGCCGCCGCCCAGCGTGCCCAGTTG 140122 ||||||||| || ||||||||||| || Sbjct 51912 GTGGTTGCCCGTCCCAAGCGTGCCCAGATG 51941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715749033139200