Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq250 708 0.0 >seq250 Length=47047 Score = 708 bits (784), Expect = 0.0 Identities = 744/973 (76%), Gaps = 8/973 (1%) Strand=Plus/Plus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| |||||||||| ||||| || ||||| ||| || | |||| Sbjct 1263 TGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACAGC 1322 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | || ||||||||||||||| |||| || |||||||||||||| ||||||||| | Sbjct 1323 TACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTATCCG 1382 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||| ||||| ||||| | || || ||||||||||| |||||||||||||| |||| Sbjct 1383 TGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTATTCC 1442 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 ||||| |||||||||| |||||||||| || || |||||||| || || | || || Sbjct 1443 AAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGACGA 1502 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||||| || || ||||| | || || | || || ||||| | | || | | Sbjct 1503 GTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGTTGC 1562 Query 162822 AGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTG 162881 ||| |||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct 1563 TTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGC 1622 Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 |||||||| |||||| ||||| | || ||| ||||| |||||| |||| || | || Sbjct 1623 TGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGATTGG 1682 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| |||||||| | |||||| | |||||||||||||| || |||| |||| | Sbjct 1683 TCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCATGAT 1742 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || |||||||| ||||| ||||| ||||||||||| ||||| | || || || || Sbjct 1743 TGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGCTGG 1802 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 |||||| ||||| || || || ||||||||||||||||| || || |||||| | | || Sbjct 1803 TGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTTAAT 1862 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 | | ||||| ||||| | || || ||||| ||||| |||||||| ||||||||||| Sbjct 1863 CCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 1922 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||||| Sbjct 1923 AACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGCTAG 1982 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 |||||||||||| |||||||||||||||||| | | | || || || || | || || Sbjct 1983 TTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTG 2042 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||| || | || ||| ||||||||||| || ||| | || ||||||||||||||||| Sbjct 2043 GTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGTTTCAACTTCAACCA 2102 Query 163362 ATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || |||||| || |||| || || ||| |||||||| |||||| ||||| | Sbjct 2103 ATCTGTAGTTGACAGCCAAGGTCGT---GTAATTAACACTTGGGCTGATATCATTAACCG 2159 Query 163419 AGCAGGACTT-GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACC 163477 || |||| ||||||||||||||||| |||||||| ||||||||||||||| | ||| Sbjct 2160 TGC-TAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCATTAGACT 2218 Query 163478 TTGCTGCTGCTGA 163490 | || ||| ||| Sbjct 2219 TAGCGTCTGGTGA 2231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553063962530160