Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq250 605 3e-168 seq316 504 8e-138 >seq250 Length=47047 Score = 605 bits (670), Expect = 3e-168 Identities = 759/1035 (73%), Gaps = 6/1035 (1%) Strand=Plus/Plus Query 162883 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 162942 |||||| ||||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 162943 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGT 163001 || ||| | |||||||| || | || |||| ||| ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 163002 CGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTA 163061 |||||||| || || || ||||| || |||||||| || || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 163062 TGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTT 163121 || |||||||| ||||||||||| ||| ||||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 163122 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 163181 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 163182 ACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAATGGGAA 163239 || | || || ||||| | | || | || ||| || ||||| ||||| |||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 163240 CTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCA 163299 ||| || || ||||||||||| || |||||| ||| |||| |||||| || |||||| Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 163300 GCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATG 163359 || ||| | || || ||| || |||| || | |||||||| |||||||| | ||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 163360 CCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATC 163419 || | || || ||||| |||||||||| |||| |||| |||||||| ||||| ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 163420 CTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCG 163479 || |||||||| ||||| || || || |||||||| || |||||||| || ||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 163480 GCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 163539 || ||||| || || || || ||| | ||||||| || ||||||| ||| || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 163540 CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 163599 ||||||||||||||||| |||||||||||||| || || ||||| ||||| |||||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 163600 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCAC 163659 || ||||| |||||||| || ||||||||||| ||||||||| | |||||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 163660 TTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACC 163719 |||||| | | |||||| || || || || ||||| || | | ||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 163720 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 163779 ||||| || ||| | || ||||||||||||||||| || | |||| | || |||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 163780 GTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCAT 163839 || | ||||||||||| || | ||||||| ||| | |||||||||||||||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 163840 GAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGAGTCCACTCCTGTGGCG 163899 ||||||||||| |||||||||||| | || | || ||| ||| || ||||| || Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Query 163900 CTTTCAGCACCTGCT 163914 | |||| || ||| Sbjct 2248 TTAACAGCTCCAGCT 2262 >seq316 Length=14323 Score = 504 bits (558), Expect = 8e-138 Identities = 732/1029 (71%), Gaps = 6/1029 (1%) Strand=Plus/Plus Query 164601 GGGTGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 164660 || ||||| || | ||||||||||| | || |||| || |||||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 164661 TCTGGATTACTACTTCTTCCCACTGCT--TATCTGGCCATTGGCGGTTGGCTTACTGGCA 164718 ||||| ||| | || || || |||| ||||| ||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 164719 CAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTA 164778 | ||||||| || |||||| || |||||| | || ||| || | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 164779 ACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 164838 |||| | ||||| || || || || || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 164839 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGG 164897 || ||||| || || |||| || ||||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 164898 AATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAG 164957 | ||| | ||| | || || || || | ||||| ||||| | || ||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 164958 CTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 165017 | ||| | || | ||| | | ||||| || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 165018 GTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 165077 || || || || || | || || || | || || | ||||||||||| ||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 165078 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGG 165137 ||||| || || || ||||||||||| | || ||| | || || || || |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 165138 ACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCT 165197 || | || || ||||||||||||||||| || ||||| | || || || || ||| | Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 165198 GCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACC 165257 ||||| ||||| | || ||||||||||| |||| || ||||| || || | || Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 165258 TTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGC 165317 |||| || ||| | | || || ||||| || ||||| ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 165318 TTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATG 165377 || ||||| || || || || |||| ||||||||||| | ||||| ||||| || ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 165378 TTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTC 165437 |||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 165438 AACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 165497 || | | ||||| || || || |||||| | ||||| ||||| ||||| |||||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 165498 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCT 165557 || || ||||| || ||||| || |||||||| ||||| | ||||| ||| |||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 165558 GCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCC 165617 ||||| || |||||||||||||| |||||||| || || |||| | || |||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 165618 CTTTAATAA 165626 ||||||||| Sbjct 11166 CTTTAATAA 11174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563188381078320