Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1059 271 1e-67 seq963 172 1e-37 >seq1059 Length=17963 Score = 271 bits (300), Expect = 1e-67 Identities = 978/1512 (65%), Gaps = 76/1512 (5%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | |||||| ||||| || || | || ||||||||| ||||||||||| | ||| Sbjct 15289 GTAGATGTTTGACGTGTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGA 15348 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || || |||||||| || |||| ||| ||| | || |||||||| ||| | Sbjct 15349 AGCAGTCGGCATGGGCGCTACCAAGAGCGAGTTGCGCAAGCCGTGCTCAAGGATTTTTTG 15408 Query 213068 CCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | ||| ||||||| || ||| || ||| | | |||| ||| ||||| || Sbjct 15409 CTTGAGCGCTGCCCAATCGTATCGCCCGGAC--GCCGGCGTC----ACGCCCCACAAATC 15462 Query 213128 AAACTGCAAGATGCCTT-TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 |||||| | |||||| || | |||| ||| | | || | || |||| Sbjct 15463 AAACTGAAGTTTGCCTTCTGATG-CGGGAGAGCCAGCAAATGTTTCATACGAACCGTGCT 15521 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 | | |||||||| || |||| ||||| |||| || || || || || || | Sbjct 15522 CTTGCGCCAGCTCCATTGAAGCCTCACACGCAGCAAAGTAAATCGTCTCGAAGATATCAC 15581 Query 213247 TGTTGAGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||||||| |||| ||||| || | ||| || | |||| | ||| ||| Sbjct 15582 GATTGAGCT-CTTGTGCCTCGTGGCTCTCGAATGGGAGGCGCATGAGGATAAACGTGTCA 15640 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCC 213365 || |||||||| ||||| | || || || | || | || ||| || || |||| Sbjct 15641 GCTAGCCCCTGAACCCCAAGCCCAATCGGGCGATGGCGCATGTTCGAGTTCTTCGCCTCC 15700 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 |||| ||||| | ||| || ||||| ||| |||||||| || || ||||| Sbjct 15701 TCCACAGGGTAGTAATTGACATCAATGATGCGGTTCAGGTTGCGTGTCACCTGCTTGGTC 15760 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACAC---------------GTAGCC----CC--CG 213464 || | ||| || ||| || | | | | | ||| || || Sbjct 15761 ACTTTGGCGAGCGCCTCATGGTCGTAGAATGGGGTCTGATTTGTGCCGCCTGTGCCGGCG 15820 Query 213465 TCC------TGC---ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACC 213515 ||| ||| |||||| | ||| || ||| |||| |||||| ||||||||| Sbjct 15821 TCCGGTTGCTGCTTGACAAACATATTCAGCGCAATGGACGCCAAGTTGCACACGGCCACC 15880 Query 213516 TCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCC 213575 || | || |||||||||| ||||| || ||||||| ||||||| ||||| ||||| Sbjct 15881 TCGTCAGGTGCTGTGTACTCAATGATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCG 15940 Query 213576 AGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCG 213635 |||||||| ||||| ||||||| |||||| | ||||||||| |||||||| || | ||| Sbjct 15941 AGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCG 16000 Query 213636 GTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTG 213695 ||||| | ||| || | || | | ||| || | | ||| | || || Sbjct 16001 GTCTCAATCTGCGAGTCAAGCACCGCAAACCACAGTTTGCGCGCC----GGAATCGTCTC 16056 Query 213696 ACAGCTC-CGGGCGTAG-CCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA 213753 | || | ||| | | | ||||||| ||| ||| | | ||| || | ||||| Sbjct 16057 GC-GCGCGCGGCCTTCGTTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCA-- 16113 Query 213754 CCCTGTC---CAGTCCCGGACAGGATGC---GGGACACATGAGGCTCCAGTCCCCGTCAT 213807 | |||| ||||||||| | | | ||| || | ||||||||| | ||||| | Sbjct 16114 -CGTGTCGCACAGTCCCGG---CGCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCT 16169 Query 213808 CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC 213867 | |||| || ||||||||||||||| |||||||||| || || || | | | Sbjct 16170 CCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCAC 16229 Query 213868 TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCC 213927 ||| ||| || ||| |||||||| || || || ||||| ||||| ||||||| Sbjct 16230 GTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCC 16289 Query 213928 ACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCC 213984 ||||||| |||||| |||||| || || | ||| |||||||| ||||| | Sbjct 16290 ACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCCCTGATCCACGTAAC 16349 Query 213985 TGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTC 214044 || ||| | | ||||| | ||||| | ||||| ||| || || || | Sbjct 16350 GCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTGACGAGCCATTTGTGC 16409 Query 214045 CCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGT 214104 || || || || ||| | | ||| |||||||| || ||||| ||||| Sbjct 16410 CCCGAATGTAGCTCTTGGTGGCACGGATGTTCGAAATGGAGAGACCGATGCCGCCGGCTG 16469 Query 214105 ACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTG 214164 ||||||| |||| ||||||||| ||| || || |||||| | || ||| ||| Sbjct 16470 ACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGATGCCTTCGATCGAGTCTTCTT 16529 Query 214165 TGAGGTTCAGCAAGAAGC---AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAA 214221 | | | |||||| |||| |||| |||||| || | | || || | ||||| | Sbjct 16530 TCATGGTCAGCAGAAAGCACGAGCT---GAGCTGCGGGCGCGGCGTGCTTGCATTGAACA 16586 Query 214222 GCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTG 214281 || || |||||| | | ||||| | || | | ||| ||||| || || Sbjct 16587 AAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTCGTACGTCTCGAGAACGC 16646 Query 214282 AGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTC 214340 |||||||||||| ||||||| || || ||| | ||||||||||||||| || | | Sbjct 16647 TCGGGATGTCGTGCATGTGGATGCCTACTGC-CACGCGCATCAGCATGTGCTGCGGTCGC 16705 Query 214341 T---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCA 214397 | | | |||| || || | | ||||| || || || || |||||||||||| Sbjct 16706 TCCACCACCTGTCCGTTCATGCGC---AAAAGGTACGAACGTTCGAGCGTCTTGAACCCA 16762 Query 214398 AAGTAGGAGTAG 214409 |||||| |||| Sbjct 16763 AAGTAGTCGTAG 16774 >seq963 Length=27641 Score = 172 bits (190), Expect = 1e-37 Identities = 378/562 (67%), Gaps = 11/562 (2%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| | ||||| || ||||| || || ||| | ||| ||| ||| Sbjct 17246 GCACGCAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAG 17305 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| ||| | || |||||||| || ||||| ||||||||| ||||| || Sbjct 17306 TCCAGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAA 17365 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || || ||||| || |||||| || | |||| | || || |||| | ||| Sbjct 17366 AATTCCTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATGCGTGCGA---TGA 17422 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | | ||||| || ||||| ||||| | ||| || ||| || || || | Sbjct 17423 GATCCACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTG 17482 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 |||||| | || || ||| ||| | || || || | |||||| | ||| Sbjct 17483 GAAGAGATGGTTCTTTTCCTCTGGGTCGGACACGTACGTGTCAATGAGCAAG---GAGTA 17539 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 | | || ||||| | ||||| || ||||||||||| || || ||| | || || Sbjct 17540 CGTTTCCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGG 17599 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | ||| || || | ||||| | ||| || |||||| || || || || || || Sbjct 17600 GATCTGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGC 17659 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 || |||||||| || ||||| || | ||| || |||| | | | |||| | ||| Sbjct 17660 GGCGAAGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGAGCGATCGCCA 17719 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG-CGAGTGCTT 48665 | | | ||| || |||||| | ||| || | ||||||||||||| | |||| | Sbjct 17720 CTGCAGCAAGTCCGAGCTCAGGTCGATTTCCTCGGCGGTCCAGAAGGACGCCTCGTGC-T 17778 Query 48666 TTTTGTACATGCCCCATATGTC 48687 | |||||||| ||| ||||| Sbjct 17779 TCTTGTACATTTTCCAGATGTC 17800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497704501760