Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq963 150 3e-31 seq1059 136 7e-27 >seq963 Length=27641 Score = 150 bits (166), Expect = 3e-31 Identities = 560/867 (65%), Gaps = 30/867 (3%) Strand=Plus/Minus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAAC-TCAAACTGGACCGCCGAAGA 25526 ||| | || || ||| | |||||||||||| | | | | || |||||||||||| || Sbjct 17806 CACCACGACATCTGGAAAATGTACAAGAAG-CACGAGGCGTCCTTCTGGACCGCCGAGGA 17748 Query 25527 GATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATC--CAAAGACGAGCAGCAT 25584 || || ||| | |||| || | || | || || || ||| || |||||||| Sbjct 17747 AATCGACCTGAGCTCGGACTTG--CTGCAGTGGCGATCGCTCAACAAGGATGAGCAGCAC 17690 Query 25585 TTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTG 25644 || ||||| | ||| | || ||||| || || || || || || || |||||| || Sbjct 17689 TTCATCAAGCATGTGCTCGCCTTCTTCGCCGCATCGGACGGAATCGTTCTGGAGAATTTG 17630 Query 25645 TGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAG 25704 |||||| | ||| | | ||| || ||| | ||| || || || || || |||||| Sbjct 17629 TGCGAGCGCTTCTCGAAGGACGTCCAGATCCCGGAAGCGCGCTGCTTTTATGGCTTCCAG 17570 Query 25705 ATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACA 25764 || || || || || | ||||| || ||| || ||| | |||||| | | Sbjct 17569 ATCGCGATGGAGAACATCCACTCGGAAACGTACTCCTTGCTCATTGACACGTACGTGTCC 17510 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 ||| | || | | | || || || || || | || ||| || | |||| Sbjct 17509 GACCCAGAGGAAAAGAACCATCTCTTCCACGCTATGGAAGAGATTCCCTGCGTGAAGAAA 17450 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 ||||| |||||| ||| ||||||| || | | ||| | |||| ||||| ||| Sbjct 17449 AAGGCCGAGTGGGCTTTGACGTGGATCT-CATC--GCACGCATCCTTTGCAGAGCGTCTG 17393 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTG 25943 || || ||||| || || || || || |||||| ||| || || |||| | ||||| || Sbjct 17392 GTCGCGTTTGCCGCAGTCGAAGGAATTTTTTTCTCCGGCTCTTTCTGCG-CAATCTTTTG 17334 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||||| || ||| |||||| || || || ||| ||||| || | || Sbjct 17333 GCTCAAGAAGCGCGGGCTCATGCCTGGACTCACGTTCAGCAATGAGCTGATTTCGCGAGA 17274 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA-AAC 26062 ||||||||| ||| | || ||||| ||||| | |||| || ||| || || || Sbjct 17273 CGAGGGTCTGCACTGCGACTTTGCGTGCCTCTTGTACA----GCATGTGC-CCGCAGAAG 17219 Query 26063 CTTCTCAA-GAGACCGTCTACAGTATCATCAAAGAG-GCTGTGGAGATCGAGAAGGAGTT 26120 || | || || || || || |||||| | ||| ||||| | | ||||||||| || Sbjct 17218 CTGCCGAACGAAACGGTGCTCAACATCATC-ACGAGCGCTGTTGCGTGCGAGAAGGAATT 17160 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180 | | || ||||||| | ||| ||| ||||| Sbjct 17159 TATTATTGACGCGCTGCCGTGCGACTTGATCGGGATGAACAGCGAACTTATGGCGCAATA 17100 Query 26181 CATTGAGTATGTGGCCGACCATCTGCTGTGCCAG---CTGGGACTCGCCAGACTCTACAG 26237 ||||||| ||| ||||||| ||||| |||| || || | || | | | ||| Sbjct 17099 TATTGAGTTTGTCGCCGACCGCCTGCT---CCAGTCCCTCGGGCACGAAAAAGTTTAC-- 17045 Query 26238 TACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 ||||| |||||||| |||| ||||| || ||| | ||||||||||||||||| Sbjct 17044 CACGCCCGCAACCCGTTTGACTGGATGGAGCTGATTTCGCTCGAAGGGAAGACCAACTTT 16985 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||| ||| | || || || || ||| Sbjct 16984 TTTGAGAAGCGTGTGGGAGAGTACCAA 16958 >seq1059 Length=17963 Score = 136 bits (150), Expect = 7e-27 Identities = 461/702 (66%), Gaps = 17/702 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCT-TGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||| ||| ||||||||||||||||| || || | |||| ||||| ||||| || | Sbjct 15860 GCCAAGTTGCACACGGCCACCTCGTCAGGTGCTG-TGTACTCAATGATTTCTGTGCACAA 15918 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||| ||| || || |||| | || || ||||| ||||| || ||||| Sbjct 15919 ATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCATCCTT 15978 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || ||| ||||| | ||| | | || | | ||| |||| Sbjct 15979 GTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACCGCAAACCACAGTTT 16038 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 | || | |||| || | || ||| || |||| ||| ||| || ||| Sbjct 16039 GCGCGCCGGAATCGTC-TCGCGCGCGCGGCCTTCGT--TTTCGTACTTGGTGTACAGCGC 16095 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACACATCAGAC 222011 || || | ||| ||| ||| ||| || || | | | | ||| || | || | Sbjct 16096 CTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGG-CGCTTCGTTGGGGCAGAAGAGGC 16154 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| || || || | || | || |||||| |||||||| |||||||||| | || Sbjct 16155 TCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAA 16214 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 ||||||| | | || ||| ||| ||||| ||| || | ||| || | ||||||| Sbjct 16215 AGAGATCACGCGCACGTGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 16274 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 ||||||| |||||||||||||| | ||| ||| | || || ||||| || | Sbjct 16275 AAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGC 16334 Query 222192 CCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 |||||||||| | | | | ||| | | || || | ||||| | ||||| | Sbjct 16335 CCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTTTG 16394 Query 222252 ATCGA-CCGTTGGTGCCCTTAATGTACGCAC-CGCCGGCCCTCAGGTT---ACTGGCAGA 222306 | ||| || || |||||| |||||| || | | ||| | | ||| | ||| ||| Sbjct 16395 A-CGAGCCATTTGTGCCCCGAATGTA-GCTCTTGGTGGCACGGATGTTCGAAATGG-AGA 16451 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 | ||||| || ||||| || || |||| ||||||| ||| || || || ||| Sbjct 16452 GA--CCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGAT 16509 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGA 222408 ||| || || ||||| || || | | |||||||||| || || Sbjct 16510 GCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGA 16551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809805772160