Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq250 668 0.0 seq316 529 2e-145 >seq250 Length=47047 Score = 668 bits (740), Expect = 0.0 Identities = 767/1029 (75%), Gaps = 2/1029 (0%) Strand=Plus/Plus Query 8239 TGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTT 8298 |||||| ||| ||| ||||| || || | || || || ||| |||| |||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 8299 GGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTT 8358 || || | ||||| || || | | | ||||| | ||||| | ||||||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTT 1350 Query 8359 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTAC 8418 ||||||||||| || || || || || ||||| |||||||||||||| ||| | | ||| Sbjct 1351 GCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATAC 1410 Query 8419 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTC 8478 ||||||||||| ||||||||||| ||| |||| || ||| || ||||| | |||||| Sbjct 1411 GGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTC 1470 Query 8479 TACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 ||||| || |||||||| |||||| | || |||||| | ||||||||||| |||| Sbjct 1471 TACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCT 1530 Query 8539 CTTGTAGTTTTCCACTTCCTCCTTGGCG-TCTTTGCTTATATGGGTCGTGAATGGGAACT 8597 || | || || ||||| | || || | | |||| || ||||||||||| |||||||| Sbjct 1531 CTAATCGTATTACACTTTTTACTAGGTGTTGCTTGC-TACATGGGTCGTGAGTGGGAACT 1589 Query 8598 TTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGC 8657 | ||||| | || ||||||||||||||| |||||||| ||||||||| ||||| || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 8658 TGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCC 8717 ||| ||||||||||| | |||| || |||||||||| ||||||||||||||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 8718 TCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCT 8777 | | ||||| || ||||| ||||||| ||| |||| ||||| |||||||| ||||| || Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 8778 GATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGC 8837 |||||||| |||||| | |||||||||||||| || || |||||||| || || Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 8838 AATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCA 8897 ||||| |||||||| || |||||| | | ||||| || || |||| || ||| Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 8898 AAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGG 8957 |||||||| |||||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 8958 CTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTT 9017 ||||||||||| || || ||||||||||| ||| ||||| ||| | | || || Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 9018 CTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCAT 9077 |||| | | | ||||| || || || || ||||| || | || || || || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 9078 GGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGT 9137 ||| || ||| | ||||| |||||||||||||| || | | ||| | ||||| || || Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 9138 GCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGA 9197 | ||||| ||||| || | ||||||| || | ||||||||||| ||||| || Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 9198 AAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAGTCCACACCTGTGGCCTT 9257 | ||||| ||||||||||| | ||| | ||| ||| ||| || |||||| || || Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 9258 GACTGCTCC 9266 || ||||| Sbjct 2250 AACAGCTCC 2258 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 35103 TCGGGATGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAA 35162 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 35163 ATCCTGTCATCCCGA 35177 >seq316 Length=14323 Score = 529 bits (586), Expect = 2e-145 Identities = 738/1028 (72%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 9811 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTC 9870 ||||||||| | | ||||||||| | || |||| || |||||||| | |||||||| Sbjct 10151 ATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGGTC 10210 Query 9871 TGGACTACTTCTTTTTCCCACTGCT--TATCTTGCAATTGGTGGCTGGCTTACTGGCACT 9928 ||| || | || | || |||| |||||||| | ||||| |||||||| || ||| Sbjct 10211 TGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACT 10268 Query 9929 ACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAAT 9988 || ||||| || |||||| ||||| || | |||||| ||| | || ||| ||| Sbjct 10269 ACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAAC 10328 Query 9989 TTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 10048 ||| | ||||| || || ||||| || ||| || |||||| || ||| || || | ||| Sbjct 10329 TTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTCTT 10387 Query 10049 -TGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGC 10107 ||||| || || |||| || |||||| | ||| ||| | || || || ||| | Sbjct 10388 GTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGAC 10447 Query 10108 TTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCT 10167 |||| | || | || || || || | |||| || ||| ||||| ||||||||| | Sbjct 10448 TTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAGAT 10507 Query 10168 GGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGT 10227 || ||| | | || | ||||||| || ||||| || ||||| || ||||| |||| Sbjct 10508 TGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTGT 10567 Query 10228 TTT--TGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCG 10285 || | ||||| |||| | || ||||| | || || |||||||||| ||||| || Sbjct 10568 GTTCGTATCAGTATTTT--TAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 10286 AGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGG 10345 ||||| || || || || || || | || | | ||| | ||||| |||||||| ||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 10346 ACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCA 10405 ||| | ||||| |||||||||||||| || |||||||| || || || || | ||| Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 10406 GCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACT 10465 || ||||| || | ||||| ||||| || | | | ||||||| || || |||| Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 10466 TTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGT 10525 || | ||||||| | |||||| ||||| || ||||| ||||| || || |||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 10526 TTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATG 10585 || ||||| || || ||||| |||||||| || ||| | ||||| |||||||||||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 10586 CTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTC 10645 |||||||||| |||| ||| | ||||| ||| ||||| || | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 10646 AATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTT 10705 ||| | | ||||| || ||||||||||| || | || || |||| |||||||||||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 10706 GAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCA 10765 || || |||||||| || ||||| || ||||||||||| |||||||||||||||| || Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 10766 GTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCA 10825 || || || || |||| |||| | |||||||| || ||||| || | || || || Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 10826 CTGTGATA 10833 || | ||| Sbjct 11166 CTTTAATA 11173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516460541616000