Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq189 179 2e-39 >seq189 Length=13781 Score = 179 bits (198), Expect = 2e-39 Identities = 265/376 (70%), Gaps = 12/376 (3%) Strand=Plus/Plus Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 ||| |||| || ||||||||||||| |||||| ||| || ||||| ||||||| | | Sbjct 12160 AATCAAAGCGTTAATCCTGATGAAGTTGTTGCGATTGGTGCAGCTGTTCAAGCAGGTGTA 12219 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 || | ||| ||| |||| | ||| | || | || |||||||| | Sbjct 12220 CTAGCTGGT-----------GAAGTTAAAGA-TATACTTCTACTAGATGTAACTCCTTTA 12267 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 || |||||| |||||||| | || || | ||||| || ||||| |||||||| || Sbjct 12268 TCTTTAGGTGTTGAAACATTAGGTGGAGTAATGACAAAGATTATTACTAGAAATACAACT 12327 Query 475961 ATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 || ||| ||||||||| |||||||||| || ||||||||| ||| ||| Sbjct 12328 ATTCCAACTAAAAAATCAGAAGTATTTTCAACAGCAGTAGATAATCAACCAAATGTTGAA 12387 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || || | || |||| |||||| |||| ||||||||||||| | || ||||| ||| Sbjct 12388 ATTCATGTGCTTCAAGGAGAAAGAGAATTTGCTAAAGATAATAAAAGCCTAGGAACATTT 12447 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | | || || ||| || ||||| ||| | || || |||||||||||||| || ||| Sbjct 12448 AGGTTAGATGGAATTTTACCAGCTCCAAGAAGTGTGCCGCAAATTGAAGTTACATTCGAT 12507 Query 476141 ATTGATGCAAATGGTA 476156 || ||| | ||||||| Sbjct 12508 ATAGATTCTAATGGTA 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268049914916072