Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq250 637 5e-178 seq316 569 2e-157 >seq250 Length=47047 Score = 637 bits (706), Expect = 5e-178 Identities = 757/1020 (74%), Gaps = 6/1020 (1%) Strand=Plus/Plus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 ||||||| || || ||||| || ||||| || ||||| | ||| | |||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 160927 GGCGTCCTGATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGT 160985 || || | |||||||| || | | ||||| | ||| ||||||||||| ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 || |||||| || || || || || || || |||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 || |||||||| ||||||||||||||||| || |||| ||||| ||| | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 |||||| || |||||||| || | | ||||| ||| | ||||||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAA 161223 || | || || ||||| | | || | || |||| |||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGCT-ACATGGGTCGTGAGTGGGAA 1587 Query 161224 CTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCT 161283 ||| |||||| | || |||||||||||||| || |||| ||||||||| || || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 161284 GCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATG 161343 || || | ||| || ||| || |||| || | |||||||| |||||||||| ||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 161344 CCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATT 161403 ||| | || || |||||||| ||||||| |||| |||| |||||||| ||||| |||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 161404 CTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGT 161463 || |||||||| ||||| | || || || ||||| ||||| || ||||| |||||| Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 161464 GCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCC 161523 || ||||||||||| || || || ||| | | |||||||| || ||||| || || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 161524 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCAC 161583 |||||||||||||||||||||||||||||||| || || ||||| |||||||| || Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 161584 GGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCAC 161643 || ||||| |||||| | || |||||||| ||| ||||||||||| || || || ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 161644 TTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 161703 |||||| | | | ||||| ||||| || || ||||| || | | ||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 161704 ATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAA 161763 ||||| || ||| | |||||||||||||||||||| ||| | ||||| || || ||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 161764 GTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 161823 || || ||||| ||||| || | | ||||||||| | || |||||||| ||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 161824 GAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAGTCCACTCCTGTGGCA 161883 ||||| || |||||||||||||| | ||| | || ||| ||| || ||||| ||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| ||||||||||| ||||||||||||| | ||||||||||| || Sbjct 35104 CGGGATGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAA 35163 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 35164 TCCTGTCATCCCGA 35177 >seq316 Length=14323 Score = 569 bits (630), Expect = 2e-157 Identities = 754/1035 (73%), Gaps = 11/1035 (1%) Strand=Plus/Plus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||||||| | | || |||||| | || ||||||||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 162171 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTCTTGGGGGTTGGCTTACTGGGA 162228 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 162229 CTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAA 162288 ||||||| || || |||||||||||| || | || ||||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 162289 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 162348 |||| | || || |||||||| |||||||| | |||||| || ||| || | ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 162349 -TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGG 162407 | ||||| || || ||||||| || |||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 162408 ACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGA 162466 |||||| | || | || || || |||| ||| |||||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 162467 ACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGC 162526 | ||| ||||| | ||| | | ||||| || ||||||||||| ||||| ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 162527 TGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586 ||| ||||| || ||| | || |||||||| || ||| | ||||| || || || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 162587 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 162646 || || || || || ||||| |||| | | ||| | || || || |||||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 162647 GACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTC 162706 |||| ||||||| || || |||||||| ||||| ||||| ||||||||||| || | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 162707 TGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACAC 162766 |||||| ||||| | || ||||||||||| | | |||||||| || || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 162767 TTTTAAAGCATTTGACTCC-ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACC 162825 |||| ||| ||| ||||| || || |||||||| ||||| ||||| || || |||| Sbjct 10805 ATTTAGAGC-TTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 162826 GCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTA 162885 | || |||||||| ||||| ||| |||||||| |||||| | ||| | |||||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 162886 TGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTC 162945 || | ||||| || || | ||| | ||||||||||| || || ||| | ||| | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 162946 TCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGT 163005 | ||| | | ||||| |||||||||||||| ||| || | || ||||| || ||||| | Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 163006 TTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCAC 163065 |||| || |||||||| || || ||||| |||| ||||| |||| |||||| | || Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 163066 CAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACG 163125 || || || |||||||| |||||| | ||||| || ||||| ||||| | || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 163126 CTCTATGAT-ATAAT 163139 | || | || ||||| Sbjct 11164 CCCTTTAATAATAAT 11178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547726563624240