Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq250 508 2e-139 >seq250 Length=47047 Score = 508 bits (562), Expect = 2e-139 Identities = 714/998 (72%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || ||||| |||| |||||||| ||||| |||||||| ||||||||||| | || | | Sbjct 2225 GACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCCATACCTAAG 2166 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||||| | ||| | | |||||||| || | || | ||| |||| | || | Sbjct 2165 TTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTG-GCTGTCAACTAC 2107 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| ||||| | ||||| |||||||| || | ||||| || Sbjct 2106 AGATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGAGATAGATGT 2047 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||| | | |||||||| || || | ||||| Sbjct 2046 TAACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTT 1987 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| ||||| || | | |||||||| ||||| || |||||||| ||||| Sbjct 1986 GAAACTAGCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCAACAATGTTATA 1927 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||||||||| || || || || |||||||| ||| ||| ||||| ||||| Sbjct 1926 AGTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTC 1867 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | ||||| || || |||||||||||| ||||| || |||||| || Sbjct 1866 ACGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGAGATCCACCAAA 1807 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || |||||||| | ||||| || ||||| || || || || || |||||||| Sbjct 1806 TACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAA 1747 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||| ||||| |||||| | |||||||||||||||||| || || Sbjct 1746 TACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTGCC 1687 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| || || | | ||||| || || |||||||| ||||| || || | Sbjct 1686 TTGACCAATCGGGTAGATCAAGAATAC--AGCAGTTGCAGCTGCAACTGGAGCAGAGAAT 1629 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| ||||| || |||||||||| | || ||||||||||| | || |||||| Sbjct 1628 GCAACAGCGATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATG 1569 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 || || | || | | |||||| || || || || | || || ||||| ||| Sbjct 1568 TAGCAAGCAACACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACCGTTGTAT 1509 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||||||||| | | ||||||||||| |||||||||||||||| ||| || || | Sbjct 1508 AACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCA 1449 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || || | | || || || || |||||||| || || ||||| | || | || Sbjct 1448 GAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACT 1389 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || ||||| |||||||| || ||||| |||||||||||||| |||||||| | ||| | Sbjct 1388 GGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATGATGAATACA 1329 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || || ||||| | || ||| ||||| | ||| |||||||| || | || | ||| Sbjct 1328 GAAGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGATATATAAACGG 1269 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 || | || || |||||||| || |||| |||||| Sbjct 1268 TTTTCAGTGCTTGTAACCCAAGAGCAGAAACGTTCCCA 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151312984125316