Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq250 601 4e-167 seq316 542 4e-149 seq181 114 2e-20 >seq250 Length=47047 Score = 601 bits (666), Expect = 4e-167 Identities = 748/1028 (73%), Gaps = 6/1028 (1%) Strand=Plus/Minus Query 103133 ACAGTAGGTGCGGTGAGTGCAACGGGGGTAGACTCTGCAGCAGCAAGGTCAAGGGGGAAG 103192 |||| || || || | |||||| || ||| || ||| || | ||| | |||||| Sbjct 2264 ACAGCTGGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAG 2205 Query 103193 TTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGAACGTCT 103252 ||||||||||||||||| ||||| ||||||||||| | ||| ||||| | | || Sbjct 2204 TTGTGAGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCA 2145 Query 103253 GCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCG 103312 ||||| ||||| | |||||||| || | |||| | || |||||||||||||| || Sbjct 2144 GCCCAAGTGTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCA 2085 Query 103313 TTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACTACTGGN 103372 || | ||| |||||||| || ||| | | || ||||| ||||| || ||||| Sbjct 2084 TTTAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGC 2025 Query 103373 NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAGATC 103432 | ||||||||||| || |||||||| || Sbjct 2024 CATAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATT 1965 Query 103433 AAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAAC 103492 |||||||| ||||||||||| || || || ||||| || || ||||| ||||| |||||| Sbjct 1964 AAACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAAC 1905 Query 103493 TTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACA 103552 |||||||||||||| ||||||| ||||||| || ||||| | | || || || Sbjct 1904 TTGTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACT 1845 Query 103553 AGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATG 103612 || |||||||||||||||||||| || || ||||| || || |||||||| || | | Sbjct 1844 AGTGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGG 1785 Query 103613 TGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTT 103672 ||||| |||||||| ||||||||||| || |||||||| || | |||| ||||||| || Sbjct 1784 TGGAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTA 1725 Query 103673 CCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAG 103732 || |||||||| ||||||||| |||| ||||| |||||||||| ||||||| |||| Sbjct 1724 CCAGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAG 1665 Query 103733 AATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATG 103792 ||||| || | ||||| ||||| ||||||||| |||| ||| |||||| || ||||| Sbjct 1664 AATACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATA 1605 Query 103793 CCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG--ATGCCAATGAGGA 103850 || | ||||||| | |||||||||||| ||||| || ||| || | || | | | Sbjct 1604 CCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGTA-GCA-AGCAACACCTAGTAAAA 1547 Query 103851 AGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTG 103910 |||| ||||| | || || | |||||||| || | |||||| || | ||| || | Sbjct 1546 AGTGTAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAG 1487 Query 103911 CTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAG 103970 |||||||||| || |||||||||| |||||| || || |||| ||| ||||||| Sbjct 1486 CTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAG 1427 Query 103971 AGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATAT 104030 |||| |||||||||||||| | | |||||||| || |||||||| || || || |||| Sbjct 1426 AGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATAT 1367 Query 104031 CGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTT 104089 | || ||||| || || ||||| |||| |||||| |||| || || | || | || Sbjct 1366 CAACTGGAGGAGCAGCAACGAATGCAATGATGAATACAGA-AGTAGCTGTTAATAATGTA 1308 Query 104090 GGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCAC 104149 || ||||| | ||||| |||||||| | ||| | |||||| | || ||||||||| Sbjct 1307 GGAATCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTAACCCAA 1248 Query 104150 TCGCAGAA 104157 |||||| Sbjct 1247 GAGCAGAA 1240 >seq316 Length=14323 Score = 542 bits (600), Expect = 4e-149 Identities = 740/1026 (72%), Gaps = 8/1026 (1%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || ||||| || | ||||| ||||| || || |||| |||||||||||| || Sbjct 11173 TATTAAAGGGCGTTTCCACGTGGCAGAACCTCCTCTGGGAATATAAAGTTTTCATGAGGC 11114 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 ||||| || |||| ||||||||| | |||||| |||||||| || || || || ||| Sbjct 11113 TGATCTTGTGCAGCCATCCATGCACGAATACCTTCGTTCAATAGAATATTTTTAGTATAG 11054 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || || ||||| ||||| ||||| | || || ||||||||||||||||| Sbjct 11053 AATGTTTCAAATTCAGGATCCTCTGCGGCTCTAAGTTCCTGAGATACAAAGTCATAAGCT 10994 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | | || | || | || | ||| || || ||||||||||||| ||| |||| || Sbjct 10993 CTTAAATTTAATGCTAATCCTACAATGCCAATTGAACTTGTCCACAAACCAGTAACTGGT 10934 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | |||||||||||| | ||| || || ||| ||| |||| |||||| ||||| Sbjct 10933 ACAAACAACATAAAGAAATGTAGCCATCTTTTGTTAGAAAAAGCAACACCAAAAATTTGT 10874 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| |||||||||||||| ||||||||||| || ||||| ||| || | | || Sbjct 10873 GACCAAAAACGGTTTGCTGTTACCATTGAATATGTTTCTTCAGATTGAGTTGGAGTAAAA 10814 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 ||| | || |||| || |||||||||||| | | || || || ||||| |||| Sbjct 10813 GCTCTAAATGTGTCCGCAGCGTCACCATCTTCAAATAAGGTATTTTCAACAGTAGCACCA 10754 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 ||||| || | | | || || || || ||||| || |||||||||||||||||||| Sbjct 10753 TGGATAGCACATAATAAGGCACCACCAAGAATACCAGCTACACCCATCATATGGAATGGA 10694 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || | |||||||||||| || ||||||| ||| | || |||||||| || || |||||| Sbjct 10693 TTTAACGTCCAGTTATGAAAACCCTGTAAGAATAATAAAAATCTAAAGATGGCAGCAACA 10634 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || ||||| |||||||| | || || | |||||| || | ||| || Sbjct 10633 CCAAAACTAGGAGCAAAAAACCAACTAGCTTGGCCTAAAGGATACATTAAAAATACTGAT 10574 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 || || |||| ||||| || || || |||||||| || || || | | || | | Sbjct 10573 ACGAACACAGATATAGGTCCTGAAAAAGCAATAGCGTTATAAGGTCTCAAACCCACAAGT 10514 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 || || | ||| || ||||| || || ||||| || || |||| || || || | ||| Sbjct 10513 CTTGCAATCTCAAACTGACGTAAACAA-AAACCTATTAGTCCAAAAGCGCCATGTAAAGC 10455 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 | ||||| ||| || || || | || ||| || |||||| ||||||||||| || Sbjct 10454 TATAAAAGTCCAAAGACCACCTATCTGACACCATCTTGTGAAATCGCCTTGAGCTTCTGG 10395 Query 102483 ACCCCA-AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTG 102541 ||||| ||| | || || ||| || |||||| | ||| || ||||| || ||||||| Sbjct 10394 TCCCCACAAGAATAATAA-AGAGTGTCCCATACTATTAGCTGGAGTTGAAACTGCAGCTG 10336 Query 102542 TAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAG 102601 | | ||| ||| |||||| | ||| | || | || || |||||||| || || Sbjct 10335 TTAAGAAGTTACAACCTTCTAAGTATGAACTTGCTAAACCATGAGTATACCAAGATGTTA 10276 Query 102602 CAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATA--AGCAGTGGGAAAAAGAAG 102659 |||| || || || |||||||| || || | || ||||| |||| || | || | Sbjct 10275 CAAAAGTAGTTCCTGTAAGCCATCCACCTAAGGCAAGATATGAGCAA--GGCAGTAGCAA 10218 Query 102660 TAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTC 102719 || ||||||||||| | || ||||| || |||| || | ||||||||| | | || Sbjct 10217 TAAACCAGACCAACCTATGAAAACAAAACGGTCTCTCTTCAACCAGTCATCTATAAGATC 10158 Query 102720 AAACCA 102725 |||||| Sbjct 10157 AAACCA 10152 >seq181 Length=69431 Score = 114 bits (126), Expect = 2e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| || || || || || ||||| || | |||||| || || | |||||||||||| Sbjct 20493 ATCTGATGTAGGATAAGCTACGCAAGTTAAAACAAATCCAGCACCAGTTTGATCGTCATC 20434 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 | ||| ||||| || |||||| | ||||| | | |||||||| |||||||| Sbjct 20433 TAAAAATGATTGGTCAGATTGATCAATCGTACCTTCTGATACTTTACCAGCGCAAGTAGA 20374 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 ||||||||||| | || ||||| || |||||||| ||| || || |||||||||| Sbjct 20373 GCACGCACCAGCTCTGCAAGAATACGGAAGATCAACCCCTTGCTCTTCTGCAGCGTCTAA 20314 Query 102994 AATATATTGATCATCCTCACA 103014 ||| ||| ||||| |||| Sbjct 20313 AATGTATACGTCATCTGCACA 20293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633489732375120