Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq250 544 2e-150 >seq250 Length=47047 Score = 544 bits (602), Expect = 2e-150 Identities = 715/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Minus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||||||||| ||||| ||||||||||| || || | || | ||| |||||||||| Sbjct 2210 GGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATG 2151 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGC-AGAGATTGGTTAAAGTT 21601 || |||||||| ||||| || || | || | || | | | | ||||||||| ||||| Sbjct 2150 ATATCAGCCCAAGTGTTAATTACACGACCTTG-GCTGTCAACTACAGATTGGTTGAAGTT 2092 Query 21602 GAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTAC 21661 ||||||||| ||||| || ||||| || || || | | | |||||||||||||| Sbjct 2091 GAAACCATTTAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTAC 2032 Query 21662 AACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTG 21721 ||| ||||| | | | ||||| ||||| ||| || || || || ||||||||||| Sbjct 2031 AACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTG 1972 Query 21722 GAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTG 21781 ||| || | |||||||| || || || ||||||||||| || ||||| ||||| ||||| Sbjct 1971 GAATATTAAACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTG 1912 Query 21782 ACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGA 21841 ||| ||||||||||||||||| || | | |||||| || ||||| || | || Sbjct 1911 ACCGAACTTGTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGA 1852 Query 21842 CGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACC 21901 || || || ||||||||||||| ||| | | ||||||||||| || || ||||| Sbjct 1851 AGTTACTAGTGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACC 1792 Query 21902 CAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTT 21961 | ||| || || ||||| ||||| || |||||||| ||||| || | |||| |||| Sbjct 1791 TAATTGGTGGAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTT 1732 Query 21962 GAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATA 22021 ||| || || || || || || |||||| ||||||| || ||| || |||| ||| || Sbjct 1731 GAATGTACCAGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTA 1672 Query 22022 AACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGG 22081 | | ||| |||||||| ||||| || || ||||||||| | |||||| |||||| || Sbjct 1671 GATCAAGAATACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGG 1612 Query 22082 CCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGA-CGCCAA 22140 | ||| |||| || ||||||||||||||||| || |||||||| |||| | | || | Sbjct 1611 ACGCATACCTAAACGGTAGCTAAGTTCCCACTCACGACCCATGTA-GCAAGCAACACCTA 1553 Query 22141 TGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTG 22200 | ||||| |||||| | || || | || |||||||| | ||| || || | | Sbjct 1552 GTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAG 1493 Query 22201 TAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGG 22260 ||||||||||||||||||||||||||| | || || ||| | || |||| || | Sbjct 1492 AAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAG 1433 Query 22261 CTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCAT 22320 | || || || ||||||||||| || | | || ||||| || ||||| ||||| |||| Sbjct 1432 CACCAGAGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCAT 1373 Query 22321 CGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC-GGCAAGG 22379 | || ||||| || || || |||| || || || || || || ||||| | || Sbjct 1372 CAATATCAACTGGAGGAGCAGCAACGAATGCAATGATGAATACAGAAGTAGCTGTTAATA 1313 Query 22380 AGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTG 22439 | | | |||||||| | || || ||||| || | ||| | |||||| | ||| || Sbjct 1312 ATGTA-GGAATCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTA 1254 Query 22440 ACCCAGGAACAAAACTGCTCCCA 22462 ||||| || || || | ||||| Sbjct 1253 ACCCAAGAGCAGAAACGTTCCCA 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202767032920