Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq250 619 1e-172 seq316 493 1e-134 >seq250 Length=47047 Score = 619 bits (686), Expect = 1e-172 Identities = 733/987 (74%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 124013 GGTGCTGTTAATGCAACCTGTGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGT 124072 || |||||||||||||| || ||| ||| |||| |||| ||||| |||||||||||| Sbjct 2258 GGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGA 2199 Query 124073 GCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCAT 124132 || || | |||||||||||||||||||| ||||| || | ||| | | |||| |||| Sbjct 2198 GCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCAGCCCAA 2139 Query 124133 GTTGGGACGATTTTTC--CGTTAGCA-TCAACAACTGATTGGTTAAAGTTGAAACCATTC 124189 || | ||| | | || || ||||| || |||||||| |||||||||||||| Sbjct 2138 GT---GTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATTT 2082 Query 124190 AAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACAGGGAAA 124249 ||||| || ||||| || | | | ||||| |||||||| | || |||||| || | Sbjct 2081 AAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCAT 2022 Query 124250 ACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGA 124309 | ||| |||||||||||| | ||||||||||| |||||| ||||| || | | Sbjct 2021 AAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAAA 1962 Query 124310 CGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTA 124369 |||||||||||||| ||||| || || ||||| || |||||||||||||| |||||||| Sbjct 1961 CGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTTG 1902 Query 124370 TAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGA 124429 ||||||||||| || || | || |||||||| | ||||| | ||| || || || Sbjct 1901 TAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACTAGT 1842 Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489 ||||| ||||| || ||||| |||||| || || | || || || ||| |||| Sbjct 1841 GAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTGG 1782 Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549 || || |||||||||||||||||||| |||||||| || | ||| |||||||| ||||| Sbjct 1781 AATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACCA 1722 Query 124550 GAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAAT 124609 || ||||| | ||||||||||||||||| || ||||||| ||||| | |||||| Sbjct 1721 GAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAAT 1662 Query 124610 ACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCT 124669 ||||| |||||| | ||||| || || | |||||| ||||||||||||||| ||| Sbjct 1661 ACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACCT 1602 Query 124670 AATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGG 124729 || | ||| |||||||||| | |||||||| | || ||| | | ||||| Sbjct 1601 AAACGGTAGCTAAGTTCCCACTCACGACCCATGTAGCAAGCAACACCTAGTAAAAAGTGT 1542 Query 124730 AAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCC 124789 || | | | | || ||||| || || ||||| || || | || || |||||| Sbjct 1541 AATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTCC 1482 Query 124790 CAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATG 124849 || |||||||||||||| | || ||||| || ||||| ||| ||||||||||| Sbjct 1481 CAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAGAGATA 1422 Query 124850 ATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACA 124909 ||||||||||| |||| |||||||| || |||||||| | ||| || || ||||| || Sbjct 1421 ATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATATCAACT 1362 Query 124910 GGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTGCTGTGAGTAAGCATGGAAT 124968 ||||| || |||| ||||||| |||||| ||| | | ||||| | ||| ||||| Sbjct 1361 GGAGGAGCAGCAACGAATGCAATGATGAATACA-GAAGTAGCTGTTAATAATGTAGGAAT 1303 Query 124969 CATTAGAACACCAAACCAACCAACATA 124995 ||||| |||||||||||||| | ||| Sbjct 1302 CATTAATACACCAAACCAACCGATATA 1276 >seq316 Length=14323 Score = 493 bits (546), Expect = 1e-134 Identities = 739/1046 (71%), Gaps = 25/1046 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||| | || || |||||||||| ||| || ||||| || || Sbjct 11171 TTAAAGGGCGTTTCCACGTGGCAGAACCTCCTCTGGGAATATAAAGTTTTCATGAGGCTG 11112 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || | | ||||||||| | || ||||| || | ||||| || || |||||||| Sbjct 11111 ATCTTGTGCAGCCATCCATGCACGAATACCTTCGTTCAATAGAATATTTTTAGTATAGAA 11052 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 || || || || || || ||||| ||||| | || |||||||||||||| || ||||| Sbjct 11051 TGTTTCAAATTCAGGATCCTCTGCGGCTCTAAGTTCCTGAGATACAAAGTCATAAGCTCT 10992 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | || | ||||| ||||| || || || || |||||||| ||| | || || || Sbjct 10991 TAAATTTAATGCTAATCCTACAATGCCAATTGAACTTGTCCACAAACCAGTAACTGGTAC 10932 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 |||||||||| ||| |||| |||||||||||||||| || | |||||| || ||||| Sbjct 10931 AAACAACATAAAGAAATGTAGCCATCTTTTGTTAGAAAAAGCAACACCAAAAATTTGTGA 10872 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| ||||| | ||| ||| |||||||| || || ||| || || Sbjct 10871 CCAAAAACGGTTTGCTGTTACCATTGAATATGTTTCTTCAGATTGAGTTGGAGTAAAAGC 10812 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 ||| || || || | | | ||| || ||||| | || || Sbjct 10811 TCTAAATGT-GTC--------CGCAGCGTCACCAT------------CTTCAAATAAGGT 10773 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || |||||||| || ||||||| ||| || ||||| || || || || || Sbjct 10772 ATTTTCAACAGTAGCACCATGGATAGCACATAATAAGGCACCACCAAGAATACCAGCTAC 10713 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || |||||||| || || ||| || ||||| |||| |||||| | | | Sbjct 10712 ACCCATCATATGGAATGGATTTAACGTCCAGTTATGAAAACCCTGTAAGAATAATAAAAA 10653 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 | |||||| || || ||||| || || || || |||||||| || |||| || Sbjct 10652 TCTAAAGATGGCAGCAACACCAAAACTAGGAGCAAAAAACCAACTAGCTTGGCCTAAAGG 10593 Query 123466 ATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 ||| || | ||| | || || ||| || | ||| | || || || | ||||| | Sbjct 10592 ATACATTAAAAATACTGATAC-GAACACAGATATAGGTCCTGAAAAAGCAATAGCGTTAT 10534 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTATGAGT 123583 ||||||| | || ||||||| ||| |||||||| || | | | || |||||||| ||| Sbjct 10533 AAGGTCTCAAACCCACAAGTCTTGCAATCTCAAACTGACGTAAACAA-AAACCTATTAGT 10475 Query 123584 CCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACG 123643 ||||| | |||||||| |||| ||| |||| ||||| || | || |||| | | Sbjct 10474 CCAAAAGCGCCATGTAAAGCTATAAAAGTCCAAAGACCACCTATCTGACACCATCTTGTG 10415 Query 123644 AATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCA 123703 || ||||| ||||| |||||||| | ||| | | | || ||||| | | | Sbjct 10414 AAATCGCCTTGAGCTTCTGGTCCCCACAAGAATAATAAAGAGTGTCCCATACTATTAGCT 10355 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || || || ||||| |||||||||||||| || || | |||||| ||| | |||| Sbjct 10354 GGAGTTGAAACTGCAGCTGTTAAGAAGTTACAACCTTCTAAGTATGAACTTGCTAAACCA 10295 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 || |||||||| ||||| || || ||||||||| | ||| ||||| | | ||||| Sbjct 10294 TGAGTATACCAAGATGTTACAAAAGTAGTTCCTGTAAGCCATCCACCTAAGGCAAGATAT 10235 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 | |||||||| || || | ||||||||| |||||||| |||||||| |||||||| ||| Sbjct 10234 GAGCAAGGCAGTAGCAATAAACCAGACCAACCTATGAAAACAAAACGGTCTCTCTTCAAC 10175 Query 123884 CAGTCGTCAAGAACATCAAACCAACC 123909 ||||| || | || ||||||||| || Sbjct 10174 CAGTCATCTATAAGATCAAACCATCC 10149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578976586235280