Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq250 646 1e-180 seq316 452 5e-122 >seq250 Length=47047 Score = 646 bits (716), Expect = 1e-180 Identities = 755/1013 (75%), Gaps = 6/1013 (1%) Strand=Plus/Minus Query 26698 GGAGCAGTAAGTGCTACAGGAGTTGACTCAGCAGCAGCAAGATCCAATGGAAAATTATGG 26757 ||||| || | ||| ||||| || ||| ||| || | || ||||| || || || Sbjct 2258 GGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGA 2199 Query 26758 GCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCCCAA 26817 ||||| | || || || || || | || | ||||||||| | | || |||||| Sbjct 2198 GCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCAGCCCAA 2139 Query 26818 GTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGA 26877 ||||| | |||||||| || |||| ||||| || |||||||||||||| || | Sbjct 2138 GTGTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATTTAAG 2079 Query 26878 TTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGCCATGCA 26937 || || ||||| || |||||| | | || ||||| || || ||||| |||||| | Sbjct 2078 TTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCATAAA 2019 Query 26938 GCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGA 26997 | | ||||||||| | ||||| ||||||||||| |||||||||||| || |||||| Sbjct 2018 CCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAAACGA 1959 Query 26998 CCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAA 27057 || ||||| |||||||| || || ||||| || || |||||||||||||||||||| ||| Sbjct 1958 CCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTTGTAA 1899 Query 27058 CCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTT 27117 |||||||| || ||| ||||||| || ||||||| | ||| || || || Sbjct 1898 CCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACTAGTGAA 1839 Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 |||||||||||| ||| ||||||||||| ||||| ||||||||||| | |||||| Sbjct 1838 CCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTGGAAT 1779 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 |||||||| || || || || || || |||||||||| |||| |||| || |||||||| Sbjct 1778 GGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACCAGAA 1719 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 ||||| | ||||||| |||| ||||| |||||||| | || |||| | |||||| Sbjct 1718 ATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAATACA 1659 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAA 27357 ||| | ||||| || ||||||||||| |||| ||| |||||| ||||||||||||||| Sbjct 1658 GCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACCTAAA 1599 Query 27358 CGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAG--ATGCCGATAAGGAAGTGGA 27415 || || |||||||||||||| ||||| | |||| || | || | | ||||| | Sbjct 1598 CGGTAGCTAAGTTCCCACTCACGACCCATGT-AGCA-AGCAACACCTAGTAAAAAGTGTA 1541 Query 27416 AGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCC 27475 | || | || || | |||||||| || |||||||| || | || || ||||||| Sbjct 1540 ATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTCCC 1481 Query 27476 AGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGA 27535 | |||||||||||||| | ||| || ||| |||||||| | ||| |||||||| || | Sbjct 1480 AAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAGAGATAA 1421 Query 27536 TGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGG 27595 ||||||| || || | | ||||||||||| |||||||| ||||| |||||||| || | Sbjct 1420 TGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATATCAACTG 1361 Query 27596 GTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATC 27654 | || || || | |||||| | ||||| |||| ||| |||| ||| | ||| || ||| Sbjct 1360 GAGGAGCAGCAACGAATGCAATGATGAATACAGA-AGTAGCTGTTAATAATGTAGGAATC 1302 Query 27655 ATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCA 27707 || | |||||| |||||||| | ||| |||||||| | ||| ||| ||||| Sbjct 1301 ATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTAACCCA 1249 >seq316 Length=14323 Score = 452 bits (500), Expect = 5e-122 Identities = 699/987 (71%), Gaps = 12/987 (1%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGT-CATC-ATCCATTCACGGAGGCCATTGTTCAAC 23486 ||||||||| || || || || | || || | |||||| |||| | || | |||||| Sbjct 11129 AAAGTTTTCATGAGGCTGATC--TTGTGCAGCCATCCATGCACGAATACCTTCGTTCAAT 11072 Query 23487 AAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGA 23546 | ||||||||| || ||||| || ||| | | ||| || || || | || || ||| Sbjct 11071 AGAATATTTTTAGTATAGAATGTTTCAAATTCAGGATCCTCTGCGGCTCTAAGTTCCTGA 11012 Query 23547 CTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACC 23606 ||||| |||||||| | | ||| | || | || | |||||||| ||| | Sbjct 11011 GATACAAAGTCATAAGCTCTTAAATTTAATGCTAATCCTACAATGCCAATTGAACTTGTC 10952 Query 23607 CAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAAC 23666 || | ||| | || || ||||||||||||||||| || | ||| | || || ||| Sbjct 10951 CACAAACCAGTAACTGGTACAAACAACATAAAGAAATGTAGCCATCTTTTGTTAGAAAAA 10892 Query 23667 GCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCC 23726 ||||| || || ||||||||||||||||| |||||||| ||||| ||||| || || || Sbjct 10891 GCAACACCAAAAATTTGTGACCAAAAACGGTTTGCTGTTACCATTGAATATGTTTCTTCA 10832 Query 23727 TCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTA 23786 ||||| | | || ||| |||| |||| || || ||||||||| | | ||| Sbjct 10831 GATTGAGTTGGAGTAAAAGCTCTAAATGTGTCCGCAGCGTCACCATCTTCAAATAAGGTA 10772 Query 23787 TTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACT 23846 || || |||||| | ||||| |||||| | | | || || || || |||||||| || Sbjct 10771 TTTTCAACAGTAGCACCATGGATAGCACATAATAAGGCACCACCAAGAATACCAGCTACA 10712 Query 23847 CCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAAC 23906 |||||||||||||| || || | ||||||||||||||| ||||| | ||| | | || Sbjct 10711 CCCATCATATGGAATGGATTTAACGTCCAGTTATGAAAACCCTGTAAGAATAATAAAAAT 10652 Query 23907 CTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGA 23966 || || || || |||||||| ||||| || ||||| |||||| | || || |||||| Sbjct 10651 CTAAAGATGGCAGCAACACCAAAACTAGGAGCAAAAAACCAACTAGCTTGGCCTAAAGGA 10592 Query 23967 TAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAG 24026 || || | ||||| || ||||| |||| ||||| || ||||||||||| || || || Sbjct 10591 TACATTAAAAATACTGATACGAACACAGATATAGGTCCTGAAAAAGCAATAGCGTTATAA 10532 Query 24027 GGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCA 24086 || | | || | || | ||| | |||||||||||||| ||||||||| ||| || Sbjct 10531 GGTCTCAAACCCACAAGTCTTGCAATCTCAAACTGACGTAAACAAAAACCTATTAGTCCA 10472 Query 24087 AAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGT-TGAAA 24145 || || || || | ||| | ||| | |||||| || || | || ||| | | ||||| Sbjct 10471 AAAGCGCCATGTAAAGCTATAAAAGTCCAAAGACCACCTATCTGACACCATCTTGTGAAA 10412 Query 24146 GTCCCCTTGAGACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAG 24204 || ||||||| || || ||||| ||| | || || ||| || |||||| | ||| | Sbjct 10411 -TCGCCTTGAGCTTCTGGTCCCCACAAGAATAATAA-AGAGTGTCCCATACTATTAGCTG 10354 Query 24205 GCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCAT 24264 | || || || || || || | |||||| ||| || | || ||||| || | |||| Sbjct 10353 GAGTTGAAACTGCAGCTGTTAAGAAGTTACAACCTTCTAAGTATGAACTTGCTAAACCAT 10294 Query 24265 GGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATA-- 24322 | || |||||| || ||||||| || || |||||||| || || | ||||||||| Sbjct 10293 GAGTATACCAAGATGTTACAAAAGTAGTTCCTGTAAGCCATCCACCTAAGGCAAGATATG 10234 Query 24323 AGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAAC 24382 |||| || || || | | ||||||||||| | || ||||| || || | || | Sbjct 10233 AGCAA--GGCAGTAGCAATAAACCAGACCAACCTATGAAAACAAAACGGTCTCTCTTCAA 10176 Query 24383 CCAGTCGTCCAAGATGTCAAACCATCC 24409 |||||| || | | ||||||||||| Sbjct 10175 CCAGTCATCTATAAGATCAAACCATCC 10149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665469327498480