Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1059 181 1e-40 seq216 102 1e-16 seq181 86.0 7e-12 >seq1059 Length=17963 Score = 181 bits (200), Expect = 1e-40 Identities = 559/859 (65%), Gaps = 13/859 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || ||| | ||||||||| | | ||||| || Sbjct 16701 CCGCAGCACATGCTGATGCGCGTGGCAGTAGGCATCCACATGCACGACATCCCGAGCGTT 16642 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAA----CACCAACCCT 75327 | ||||| ||||| | | |||| ||| | |||| |||||||| | || || | Sbjct 16641 CTCGAGACGTACGAAATGTTGTCGCAA---AAGTTC-TTCACGCATGCCTCGCCGACTTT 16586 Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||||||| | || || | |||||| | | ||||| || | ||| || || Sbjct 16585 GTTCAATGCAAGCACGCCGCGCCCGCAGCTCAGCTCGTGCTTTCTGCTGACCATGAAAGA 16526 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||||| ||| | || ||||||| || || | | || ||| || || |||| || Sbjct 16525 AGACTCGATCGAAGGCATCTATGATACGCTGAAGCGCTGCGCGGTGATTTCCAAGTCAGC 16466 Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 75506 || || || || | ||| | | | |||| || | || |||||||| | Sbjct 16465 CGGCGGCATCGGTCTCTCCATTTCGAACATCCGTGCCACCAAGAGCTAC-ATTCGGGGCA 16407 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 ||||||| ||| | || ||| | |||||||| || || | || | ||||||||| | Sbjct 16406 CAAATGGCTCGTCAAACGGCATTGTACCAATGCTGCGAGTGTACAATGACACAGCGCGTT 16347 Query 75567 ATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | || |||| | || || ||||| || | | || |||| | || || |||| Sbjct 16346 ACGTGGATCAGGGCGGTGGTAAGCGCAAAGGTGCGTTTGCCTGCTACATTGAGCCGTGGC 16287 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | ||||| || | |||||||| || | || ||||| || | |||||| | || Sbjct 16286 ACGCCGACATTTTTGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAAGAGTCACGTG 16227 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | |||||||||| | ||||||| || ||||| ||||||||||| || ||||||| Sbjct 16226 CGCGTGATCTCTTTTACGCGCTGTGGACGCCGGACCTGTTCATGAAGCGAGTGGAGGAGG 16167 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 || || ||| || ||||| || || | || || || || | |||| || |||| Sbjct 16166 ACGGACAGTGGAGCCTCTTCTGCCCCAACGAAGCGCCGGGACTGTGCGACACGTGGGGTC 16107 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 ||| || || || || ||||| ||||| ||| | || || | || | ||| | | Sbjct 16106 CGGACTTCGAGGCGCTGTACACCAAGTACGAAAACGAAGGCCGCGCGCGCGAGACGATTC 16047 Query 75864 CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 | || | | | ||| || | || | || |||| ||||| || ||||| || | Sbjct 16046 CGGCGCGCAAACTGTGGTTTGCGGTGCTTGACTCGCAGATTGAGACCGGCACACCGTACA 15987 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 |||| ||||||||||| ||| ||| ||||| |||| | || |||||| | Sbjct 15986 TGCTGTACAAGGATGCCGCCAACTCAAAGTCGAACCAGCAGAACCTCGGCACAATCCGCA 15927 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 || ||| | ||||| ||||| | |||||||||| || ||| ||| || |||| Sbjct 15926 GCAGCAATTTGTGCACAGAAATCATTGAGTACACAGCACCTGACGAGGTGGCCGTGTGCA 15867 Query 76044 ATTTGGCATCAATCGCCCT 76062 | ||||| || || || || Sbjct 15866 ACTTGGCGTCCATTGCGCT 15848 Score = 111 bits (122), Expect = 2e-19 Identities = 385/586 (66%), Gaps = 15/586 (3%) Strand=Plus/Minus Query 76350 TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGC 76409 |||| ||| || ||||| ||||| ||||||| || |||||||| || |||| | Sbjct 15530 TGGCGCAAGAGCACGGTTCGTATGAAACATTTGCTGGCTCTCCCGCATCAGAAGGCAAAC 15471 Query 76410 TTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC----TACGACTGGGATGTTCTC 76465 ||||||||||| |||||| | ||| || || ||||| |||| | ||| Sbjct 15470 TTCAGTTTGATTTGTGGGGCG-TGACGCCGGCGTCCGGGCGATACGATTGGGCAGCGCTC 15412 Query 76466 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACA 76525 ||| || ||| ||| | || | || ||| || ||| | || || ||||| || Sbjct 15411 AAGCAAAAAATCCTTGAGCACGGCTTGCGCAACTCGCTCTTGGTAGCGCCCATGCCGACT 15352 Query 76526 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATC 76585 || ||||| | || || ||||||| || || ||||||||||| ||||| |||||||| Sbjct 15351 GCTTCCACGTCGCAGATTCTGGGTAACAACGAGTGCTTTGAACCGTACACGTCAAACATC 15292 Query 76586 TACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGAC 76645 ||| | | | ||||| || ||||| | | |||| |||||||| | | | ||| Sbjct 15291 TACACGCGCCGCGTTCTCGCGGGCGAGTTCGCCGTTGTTAACAAGCATTTGCTGAGTGAT 15232 Query 76646 CTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT-GAAAGCGGGTGG 76704 || ||| |||| || ||| ||| | | |||| | || | | || | ||| Sbjct 15231 CTGCAGAGTCTTGGCCTTTGGAACAATGCGACGAAGAACAAGATCATCGCAAAC-AATGG 15173 Query 76705 TTCCATTCAAAATATCTCAGATATCCCAGATGATAT-CAAGAATCTCTACCGCACAGTGT 76763 ||| | |||| | | || || || | ||| | | ||| || ||| || || | Sbjct 15172 TTCAGTACAAAGCCTGACGGAGATTCCGGCTGAGCTGCGTGAA-CTTTACAAAACCGTTT 15114 Query 76764 GGGAAATCAAGATGAAAGATGTCATTG-ACATGGCCGCAGATCGTGGTCGC-TTCATTGA 76821 ||||||| | | |||| | ||| | ||||| || || ||||| ||| ||||| || Sbjct 15113 GGGAAATTTCGCAG-AAGACATTGTTGAAGATGGCGGCCGACCGTGG-CGCGTTCATCGA 15056 Query 76822 TCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAAGCTCTCTTCTA 76880 ||||| || ||||| | |||| |||||| | |||||| || || | Sbjct 15055 CCAAAGCATGAGCTTGAATGTGCATATGGCTGCCCCCAACGCAG-GCAAGCTGTCCTCCA 14997 Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||| | |||| ||||||| ||| ||||| ||||| ||||| || Sbjct 14996 TGCACTTTTACGGATGGAAACTGGGCCTCAAGACCGGTATGTATTA 14951 >seq216 Length=49752 Score = 102 bits (112), Expect = 1e-16 Identities = 275/412 (67%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||| ||||| || || | |||| | ||| ||||| ||||| |||||||| Sbjct 952 GGCGCCAAAATCCCGCGTGGTGTGATTCTGGAAGGTCCTCCAGGAACGGGTAAGACCCTG 1011 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| | || ||||| | ||||| ||| || | | | | | | Sbjct 1012 CTTGCGCGCGCCGTGGCCGGTGAGGCCGGCGTCCCCTTCTTCTCGATTGCAGGCTCCGAG 1071 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| |||||||| || | || || ||||| || ||| Sbjct 1072 TTTGTGGAGATGTTTGTGGGTGTGGGCGCTTCGCGTGTGCGTGATCTTTT----CTCGAA 1127 Query 175456 CGC---GAAAATC-AACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 ||| ||||| | ||| || || | |||||||| || || || ||||| || | || Sbjct 1128 CGCAAAGAAAAACGCACCTTGCATCATTTTCATTGACGAAATCGACGCGGTCGG-ACGCC 1186 Query 175512 ACGCAGCGCTGGTGGTAT-GCC--AGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 | || ||| | ||||| ||| | ||||||||| | || ||||| | |||||| | Sbjct 1187 A-GC-GCGGAGCCGGTATCGCCGGTGGAAATGACGAACGTGAGCAAACGCTGAATCAAAT 1244 Query 175569 ACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||| |||||||| || ||||| | | || || | || || ||||| || || Sbjct 1245 GCTCGTGGAGATGGACGGGTTTGAGGCGAACAGCGGAATCATCGTCATCGCGGCAACGAA 1304 Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGC 175680 ||| ||| | || || ||| | || ||||| ||||| ||||||||| Sbjct 1305 CCGCTCCGATGTGCTGGACCGCGCGTTGCTGCGCCCAGGTCGATTTGATCGC 1356 >seq181 Length=69431 Score = 86.0 bits (94), Expect = 7e-12 Identities = 172/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| || ||||||||||| || ||||| || || || ||| | ||| | || Sbjct 14460 TTTGTTGAAATGTTTGTTGGCGTAGGTGCTTCTAGAGTACGTGATTTATTTAA----GCA 14405 Query 175456 CGCGAA----AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 || || ||| ||| || ||||| || |||||||| |||||||| || || || Sbjct 14404 AGCAAAAGCTAATGCACCTTGCATTGTATTTATTGATGAAATTGATGCTGTTGGGCGCCA 14345 Query 175512 ACGCAGCGCTGGTGGTA--TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | | ||| || || | | ||||| |||||||| ||||| | |||||| | Sbjct 14344 ACGTGGTACAGGT-ATAGGTGGC-GGTAATGATGAGAGAGAGCAAACTTTGAATCAAATG 14287 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 | || || |||||||| ||||| | ||||| || | |||||||| || |||||| Sbjct 14286 TTGACAGAAATGGATGGATTTGAGGGAAATACTGGTGTTATTGTTATTGCAGCGACTAAT 14227 Query 175630 CGCGTGGATAT 175640 | | ||||| Sbjct 14226 AGGGCAGATAT 14216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596547124240320