Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq250 657 0.0 >seq250 Length=47047 Score = 657 bits (728), Expect = 0.0 Identities = 740/985 (75%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| |||| ||||||||||||||||||||||| || || | |||||||||||||||||| Sbjct 2231 TCACCAGACGCTAAGTCTAATGGGAAGTTGTGAGCGTTACGCTCATGCATAACTTCCATA 2172 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 |||||||| || | ||| | | ||| |||| || ||| | ||| | ||| Sbjct 2171 CCTAAGTTAGCACGGTTAATGATATCAGCCCAAGTGTTAATTACACGACCTTGGCTGTCA 2112 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 || || |||||||| ||||| || || || | |||||| ||||| || | | | ||| Sbjct 2111 ACTACAGATTGGTTGAAGTTGAAACCATTTAAGTTAAACGCCATAGTTGATACAGAGATA 2052 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 || |||||||||| || ||||||||| || | | | |||||||||||| | | | Sbjct 2051 GATGTTAACCAAATACCTACAACTGGCCATAAACCTAAGAAGAAGTGAAGTGAACGAGAG 1992 Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| ||||| ||||| | ||||||||| ||||| ||||||||||| Sbjct 1991 TTGTTGAAACTA-GCATATTGGAATATTAAACGACCAAAGTAACCATGTGCAGCAACAAT 1933 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 ||||| || |||||||||||||| ||||| ||||||||||| ||| || | |||||| Sbjct 1932 GTTATAAGTTTCTTCTTCTTGACCGAACTTGTAACCATAGTTAGCAGATTCATTTTCAGT 1873 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 ||| || | ||||| | ||| || |||| |||||||||||||||||||| || ||||| Sbjct 1872 TGTTTCACGGATTAAACTAGAAGTTACTAGTGAACCGTGCATAGCACTGAATAGAGATCC 1813 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||| || | ||| || || ||| ||||| || ||||| |||||||||||||| || Sbjct 1812 ACCAAATACACCAGCAACACCTAATTGGTGGAATGGGTGCATTAGAATGTTATGCTCAGC 1753 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 ||||||||| | ||||||||| || |||||||||||||||| |||||| ||||||||||| Sbjct 1752 TTGGAATACAATCATGAAGTTGAATGTACCAGAAATACCTAAAGGCATACCATCAGAGAA 1693 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||||| || || | ||||| || || ||||| | ||||||||| Sbjct 1692 GCTGCCTTGACCAATCGGGTAGATCAAGAATACAGCAGTTGCAGCTGCAACTGGAGCAGA 1633 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTAC 8539 |||| ||| |||||| || | ||||||||| ||||| | ||| ||||||| | || Sbjct 1632 GAATGCAACAGCGATCCAAGGACGCATACCTAAACGGTA-GCTAAGTTCCCACTCACGAC 1574 Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599 ||||||| || || || | | ||||| || | | | | || || |||| Sbjct 1573 CCATGTAGCAAGCAACACCTAGTAAAAAGTGTAATACGATTAGAGGGTAGCACCCACCGT 1514 Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659 | || |||||||| ||||| | |||||||||||||| || |||||||| | ||||||| Sbjct 1513 TGTATAACCACTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCAATAG 1454 Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTG 8719 | ||| ||||| |||||||||||||| |||||||| || || | || ||||| | Sbjct 1453 CAGCAGAACTTGGAATAACAGCACCAGAGATAATGTTGTTACCGTATAGTAAAGAACCAG 1394 Query 8720 CAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAA 8779 |||| |||||||| ||||| || ||||| || || |||||||||| ||||| | ||| | Sbjct 1393 CAACTGGTTCACGGATACCATCAATATCAACTGGAGGAGCAGCAACGAATGCAATGATGA 1334 Query 8780 AGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAA 8839 | || || ||| | ||| || ||||||||||| || ||||||||||||| ||| | Sbjct 1333 ATACAGAAGTAGCTGTTAATAATGTAGGAATCATTAATACACCAAACCAACCGATATATA 1274 Query 8840 GTCTGTTGTTTGTACTTGTAACCCA 8864 | ||| | || ||||||||||| Sbjct 1273 AACGGTTTTCAGTGCTTGTAACCCA 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615839197384080