Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq250 655 0.0 seq316 526 2e-144 seq400 102 9e-17 >seq250 Length=47047 Score = 655 bits (726), Expect = 0.0 Identities = 766/1032 (74%), Gaps = 2/1032 (0%) Strand=Plus/Plus Query 165760 TGGGAATCCTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTT 165819 |||||| |||||| |||||||| ||||| | |||||| | ||| ||||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 165820 GGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 165878 ||| | |||||||| || | || |||| ||| |||| |||||| | || ||| | Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 165879 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTA 165938 |||||||| || || || || || || ||||||||||| || ||||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 165939 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTT 165998 ||||||||||| ||||||||||| ||| |||| ||| || |||||| | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 165999 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCA 166058 ||| || || |||||||| || || | ||||| ||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 166059 ACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 166118 || | || || ||||| | | || | | |||||||||||||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 166119 GTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGC 166178 |||||| ||||||||||||| |||||| |||||| | ||| || ||||| || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 166179 TGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCC 166238 ||| | ||| |||||| | | || || | |||||||| || |||||||||| ||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 166239 ACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCT 166298 | || || || || |||||||||| |||| | || |||||||||||||| || ||||| Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 166299 CATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGC 166358 ||||| || ||||| | || |||||||| ||||||||||| | | || ||||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 166359 TATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCA 166418 ||||||||| | || |||||| | | | | || || ||||||| ||||| Sbjct 1830 TATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGC 1889 Query 166419 AAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGG 166478 ||||| |||||||||||||| |||||||||||||| || ||||| || || || ||||| Sbjct 1890 TAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGG 1949 Query 166479 TTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTT 166538 |||||| |||||||| || |||||||| ||| ||||||||||| || || | ||||| Sbjct 1950 TTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTT 2009 Query 166539 CTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGAT 166598 |||| | | | |||||| ||||| || || ||||| || | | || || || || Sbjct 2010 CTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTAT 2069 Query 166599 GGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 166658 ||| || ||| | || ||||||||||||||||| || | |||| | || |||||||| Sbjct 2070 GGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGT 2129 Query 166659 GTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGA 166718 | ||||| ||||| ||| | ||||||| ||| | |||||||||||||||||||| Sbjct 2130 AATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGA 2189 Query 166719 GCGTAACGCACACAACTTCCCCCTCGACCTCGCTGCTGCTGAGTCCACTCCTGTGGCACT 166778 ||||||||| ||||||||||| | ||| | || ||| ||| || ||||| ||| | Sbjct 2190 GCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATT 2249 Query 166779 CACCGCTCCTGC 166790 || ||||| || Sbjct 2250 AACAGCTCCAGC 2261 >seq316 Length=14323 Score = 526 bits (582), Expect = 2e-144 Identities = 744/1035 (72%), Gaps = 13/1035 (1%) Strand=Plus/Plus Query 167008 GGGTGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 || ||||||||| | | ||||||||| | || || || ||||||||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 167068 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGGA 167125 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 167126 CTACTTTCGTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGC 167183 ||||||| || || ||||||||||||||| | || || || || | || ||| Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCA--TACTTAGAAGGTTG 10324 Query 167184 GAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCT 167243 ||||| | || || |||||| |||||||| || |||||| || |||||| || | Sbjct 10325 TAACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTA-TTAT 10383 Query 167244 TCTA-TGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCT 167302 ||| ||||| || ||| ||||||| |||||| || ||| || | || || || | Sbjct 10384 TCTTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTT 10443 Query 167303 GGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTT 167361 || ||||| | || | || || || |||| || || ||||| || || || |||||| Sbjct 10444 GGACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTT-TGTTTACGTCAGTTT 10502 Query 167362 GAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATT 167421 || |||| | || | ||| | | || || || ||||||||||| || || ||||| Sbjct 10503 GAGATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATA 10562 Query 167422 GCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCC 167481 |||| ||||| || || | | ||||| | || ||| || ||||| ||||| Sbjct 10563 TCTGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCT 10622 Query 167482 CCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAAC 167541 || || || || || |||||||| |||| | | ||| | || || || || ||| Sbjct 10623 CCTAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAAC 10682 Query 167542 TGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTT 167601 ||||| | |||||||| ||||||||||||||||| ||||| || |||||||| || | Sbjct 10683 TGGACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTA 10742 Query 167602 TCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAAC 167661 | ||| |||||||||| ||| || || ||||| || | |||||||||||| || || Sbjct 10743 TGTGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGAC 10802 Query 167662 ACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAAC 167721 || |||| || || | | ||||| ||||| || ||||||||||| ||||||||| Sbjct 10803 ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAAC 10862 Query 167722 CGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTT 167781 || || ||||| || || || || ||||||| |||||| | ||||| ||||||||| Sbjct 10863 CGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTT 10922 Query 167782 ATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCT 167841 ||||| || || || |||| || | |||||| || |||||||| | || | || Sbjct 10923 ATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCA 10982 Query 167842 CTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAG 167901 | ||| | | ||||| || || || ||||| || | ||||| || |||||||| || Sbjct 10983 TTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAA 11042 Query 167902 TTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCA 167961 |||||||| |||||||||||||| || || |||| |||||| |||| |||||| | || Sbjct 11043 TTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCT 11102 Query 167962 CCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAAC 168021 | ||||| |||||||| |||||| | ||||||||||| ||||| ||||| || ||| Sbjct 11103 GCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 168022 GCACTATAA-AATAA 168035 || || ||| ||||| Sbjct 11163 GCCCTTTAATAATAA 11177 >seq400 Length=4522 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 18127 ATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAA 18186 |||||| |||||||||| || ||||| |||| ||||||| ||||||||||||||||||| Sbjct 3861 ATTCCTTAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGTAGGTTCAAG 3802 Query 18187 TCCTACCTGGGGAGTT 18202 ||||||||| |||||| Sbjct 3801 TCCTACCTGAGGAGTT 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561226854981600