Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1055 345 6e-90 seq1200 161 1e-34 seq970 152 7e-32 seq2751 127 3e-24 seq189 123 3e-23 >seq1055 Length=10011 Score = 345 bits (382), Expect = 6e-90 Identities = 1048/1604 (65%), Gaps = 40/1604 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||| ||||| || || || ||||| || || || || ||||| |||||||| || ||| Sbjct 7293 GGTATTGATTTGGGCACCACGTACTCGTGCGTGGGCGTGTGGCAGAATGATCGCGTCGAG 7234 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || |||| ||||||||||| || || || || |||||||| || || ||||| | Sbjct 7233 ATCATTGCGAACGACCAAGGAAATCGAACCACGCCGTCGTACGTGGCGTTCACAGACACG 7174 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || |||||| | || ||||| ||||| || ||| || |||||||| ||| || || Sbjct 7173 GAGCGTCTCATCGGCGATGCGGCAAAGAACCAGGTGGCGATGAACCCGCACAACACGGTG 7114 Query 195485 TTTGACGCGAAGCGTCTTATTGGTC-GCAAGTT--TTCGGATAAGAAAGTCCAAGACGAT 195541 |||||||| ||||| | ||||||| || || ||| | || || | || Sbjct 7113 TTTGACGCAAAGCGAATGATTGGTCTGCGCTTTGACTCG---CCGTCCGTGCAGGCGGAC 7057 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTT 195601 | ||| ||| | | | || || || | || | ||||| | |||| | || Sbjct 7056 CTCAAGCACTTCCCGTTCAAGGTGGTGGGCGCAGAGGACAACAAGCCCAAGATTGAGGTC 6997 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 | | | || |||| || ||| || || ||||| ||| | |||||| || | Sbjct 6996 AAGTACAAGGGCGAGACCAAGACATTCATGCCAGAGGAAATCTCGGCCATGGTGCTGGGT 6937 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| | | || | | | | | || ||||| | || |||||||| Sbjct 6936 AAGATGAAGGAAATCTCAGAGGCATACCTTGCCAAGGAGGTGAAGAACGCGGTTGTGACC 6877 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 |||||||| |||| || || || || | ||| || ||||| || | | ||||| Sbjct 6876 GTACCTGCGCGTTTCAACGACTCGCAGCGTCTGGCCACCAAGGATGCCGGTCAGATTGCT 6817 Query 195782 GGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 ||||| || ||| || |||| || || || ||||| |||||||| ||||| || || | Sbjct 6816 GGTCTGAA-TGTGTTGCGAATCATTAACGAGCCAACGGCGGCTGCGATTGCCTACGGGTT 6758 Query 195841 GGACAAGAA-----CAAG-------GACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 ||||| ||| |||| || || || | || | || | ||||| || Sbjct 6757 GGACAGGAAGGAAGCAAGCGGCTCCCACTCCGAGAAGATGGTGCTCATTTACGATCTGGG 6698 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG---GTGGTATATTCGAAGTAAA 195945 ||||| || || ||||| || ||||| | ||||| | || | || || || || Sbjct 6697 AGGTGGAACATTCGATGTGTCTCTTCTGAGCATTGACGACACGGGCGTCTTTGAGGTCAA 6638 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCT--TCTCCGT 196003 ||| || |||||||| || || | |||||||| || || || ||||| | | | Sbjct 6637 GGCCACCGCTGGTGACACGCACTTGGGTGGTGAGGACTTTGACAACCGTCTGGTGAACTT 6578 Query 196004 CATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGAT-------ATTTCTGGAAATC- 196055 | ||||| | || ||| || ||||| ||||| ||| | | ||| || Sbjct 6577 C-TTTGT-GCAAGAATTCAAGCGCAAGAACAAGAAGGATCTCACCCAGGGCCCGAACTCG 6520 Query 196056 -CTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 | | || | || || || | || || || || || || || | || | || || Sbjct 6519 GCGCGCGCCATGCGCCGTCTGCGCACGGCTTGCGAGCGCGCAAAGAGGACATTGTCATCC 6460 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || ||| | |||||||||| || ||| ||||| ||||||| || | | Sbjct 6459 GCCACGCAGACATCGATTGAGATTGACGCGCTGTACGACGGTGTTGACTTTTACTCGTCC 6400 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAG-GAAGTGTATGGAACC 196233 || || || || ||||| ||| | | || |||| | | || |||| || Sbjct 6399 ATCACGCGCGCCAAGTTTGAGGAGCTGTGCATGGACCTGTTCCGCGGCACGT-TGGAGCC 6341 Query 196234 TGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCT 196293 || || || || || || || ||| || ||||| |||| || || || || || Sbjct 6340 CGTAGAGCATGTGCTGAAGGAGGCGAAGGTGAGCAAGTCGGAGGTCGACGAGATCGTGCT 6281 Query 196294 TGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAA 196353 ||||| || || || || | || ||| | || ||| |||| ||||||||| Sbjct 6280 GGTGGGCGGCTCTACGCGAGTGCCAAAGGTGCAGCAGCTGCTGCAGGACTTCTTCAACGG 6221 Query 196354 TAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCA 196413 || || | ||| || |||||||| ||||| || ||||| || ||||| || || || Sbjct 6220 CAAGGAACTGTGCAAGACCATCAACCCAGATGAGGCCGTTGCCTACGGTGCTGCGGTGCA 6161 Query 196414 GGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGT 196473 ||| || ||||| |||||| | | || || |||||| |||| || ||||| Sbjct 6160 GGCCGCCATTCTGACAGGTGATACCTCGTCCAAGACGCAGGATCTTTTGCTGCTCGATGT 6101 Query 196474 TGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAG 196533 | || | || |||||||| || || || |||||||| ||||| | | || | | Sbjct 6100 GACCCCACTGTCGCTGGGTCTGGAGACCGCTGGTGGTGTGATGACGACGCTGATCAAGCG 6041 Query 196534 GAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACC 196593 ||||| || || || || |||||| | || |||| || || || | || || || || Sbjct 6040 CAACACGACGATCCCCACCAAGAAGCAGCAGATCTTCTCGACATACGCTGACAACCAGCC 5981 Query 196594 AGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACT 196653 |||||| | |||||| || | |||||| ||||| | || | ||||| ||| | | || Sbjct 5980 AGGTGTGCTTATTCAGGTCTTTGAAGGTGAACGTGCGCGCACCAAGGACAACAACTTGCT 5921 Query 196654 TGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGT 196713 || | || || || | || |||||| | || ||| | |||||||| ||||| | || Sbjct 5920 CGGCAAGTTTGAGCTGTCTGGTATTCCACCGGCGCCCCGCGGTGTTCCGCAGATCGAGGT 5861 Query 196714 TTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGG 196773 ||| ||| | || || || || || ||||||| | || ||||||||| | |||| Sbjct 5860 GACCTTTGATGTCGATGCTAACGGTATCTTAAACGTGTCTGCCGAGGACAAGTCGACTGG 5801 Query 196774 CAAATCTGA-AAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832 ||| || ||||| || || || |||||||| || || || ||||| | || | Sbjct 5800 -AAACAAGAGCAAGATCACAATCACGAACGACAAGGGTCGCCTGTCGAAGGACCAGATCG 5742 Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | ||||| || ||||| || ||||||| || || || ||| Sbjct 5741 AGAAGATGGTCCAGGATGCCGAGAAGTACAAGGCGGAGGATGAG 5698 >seq1200 Length=24482 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || ||||| |||||||| ||||| || Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || |||||||| || ||||| ||||| || || |||||| Sbjct 18835 GACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 18776 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || || || || || ||| | || |||||| Sbjct 18775 CAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACAAC 18716 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| || || ||| | || || Sbjct 18715 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCT 18684 >seq970 Length=23808 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || ||||| | ||||| ||||| || Sbjct 22732 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCCTCG 22673 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| |||||||| |||| || ||||||||||| ||||||||||| || || || ||| Sbjct 22672 GACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGACCAG 22613 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | |||||||| || || ||||| || || ||||| || || | || || ||| Sbjct 22612 CAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGACGGACGAACACTGTCAGACTATAAC 22553 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || | ||| | ||||| | || || ||||| Sbjct 22552 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTGCGTCTGCGCGGTGG 22506 >seq2751 Length=18403 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| || |||||||| || || || ||||| || ||||| |||||||| |||||| Sbjct 18254 AGCATGCAGATTTTTGTGAAGACGCTGACCGGAAAGACCATCACGCTCGAGGTGGAGTCG 18313 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| || ||||| | || ||||||||||| || ||||| ||||| || || || Sbjct 18314 TCCGACACGATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGAC 18373 Query 171979 CAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| || || ||||| || || || ||| Sbjct 18374 CAGCAGCGCCTGATTTTCGCCGGAAAGCAG 18403 >seq189 Length=13781 Score = 123 bits (136), Expect = 3e-23 Identities = 264/389 (68%), Gaps = 18/389 (5%) Strand=Plus/Plus Query 196352 AATAAAGATT-TAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGT 196410 |||||||| ||| |||| || | || || ||||||| ||||| |||||| || || Sbjct 12148 AATAAAGAACCTAATCAAAGCGTT-AATCCTGATGAAGTTGTTGCGATTGGTGCAGCTGT 12206 Query 196411 TCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGA 196470 ||| || | | | || | |||| | || ||||| | || ||||| || Sbjct 12207 TCAAGCAGGTGTACTAGCTGGTG------------AAGTTAAAGATATACTTCTACTAGA 12254 Query 196471 TGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGA 196530 ||| | || |||| | ||| |||||||| ||||| || ||||| || |||||| Sbjct 12255 TGTAACTCCTTTATCTTTAGGTGTTGAAACATTAGGTGGAGTAATGACAAAGATTATTAC 12314 Query 196531 TAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAAC-GTATTCCGATAATC 196589 ||| || ||||||||||| ||||| || | |||| |||||||| | | | ||||||| Sbjct 12315 TAGAAATACAACTATTCCAACTAAAAAATCAGAAGTATTTTCAACAGCAGT-AGATAATC 12373 Query 196590 AACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATC 196649 ||||| |||| | ||||| || | |||||||| | ||| || ||||| | Sbjct 12374 AACCAAATGTTGAAATTCATGTGCTTCAAGGAGAAAGAGAATTTGCTAAAGATAATAAAA 12433 Query 196650 TACTTGGAAC-TTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 || ||||| ||| | || || || ||| | | || || ||| |||| || || ||| Sbjct 12434 GCCTAGGAACATTTAGGTTAGA-TGGAATTTTACCAGCTCCAAGAAGTGTGCCGCAAATT 12492 Query 196709 AATGTTTGCTTCGATATAGACGCAAATGG 196737 | ||| ||||||||||| | ||||| Sbjct 12493 GAAGTTACATTCGATATAGATTCTAATGG 12521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657837615034080