Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq250 544 2e-150 >seq250 Length=47047 Score = 544 bits (602), Expect = 2e-150 Identities = 715/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Plus Query 41225 TGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTC 41284 ||||| | || || || ||||| || ||| | |||||| | ||| | || ||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 41285 GGAGTCCTTATGATTCCGTGCCTCCTTGCC-GCTACAACTTGTTTTATTATCGCCTTTGT 41343 || || | |||||||| | | | || | ||||| || || || || || || || Sbjct 1291 GGTGTATTAATGATTCC-TACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGT 1349 Query 41344 TGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTA 41403 || || || || ||||| || ||||| ||||| ||||| || ||||| || | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 41404 TGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTT 41463 ||||||||||| || || || || || |||| || | ||| || || | ||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 41464 CTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCA 41523 |||||||||||||||||||||| | | || || ||| | |||||||| || | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 41524 ACTCACCGTATTCCACTTCCTCATTGGCG-TCTTTGCTTACATGGGACGAGAGTGGGAAC 41582 || | |||||| ||||| | | || | | |||| |||||||| || |||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGC-TACATGGGTCGTGAGTGGGAAC 1588 Query 41583 TTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCG 41642 ||||||| || |||| ||| | || |||||| |||||| | ||||||||| || || | Sbjct 1589 TTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAG 1648 Query 41643 CTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGC 41702 |||| |||||||| ||| | | || ||| |||| || ||| || ||||||| ||||| Sbjct 1649 CTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGC 1708 Query 41703 CCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTC 41762 | || || || || || || ||||||| |||| | || ||||| |||||||| || |||| Sbjct 1709 CTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTC 1768 Query 41763 TTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTG 41822 | ||||| || || ||| | ||||| || || ||||||||||| | | ||| || Sbjct 1769 TAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTG 1828 Query 41823 CTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCAC 41882 ||||||||||| || || || || | || ||||| || |||||| | | || Sbjct 1829 CTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTG 1888 Query 41883 AGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACG 41942 ||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| || | Sbjct 1889 CTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATG 1948 Query 41943 GCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATT 42002 | || |||||||| | || |||||||||||||| || || || || ||| ||||| | Sbjct 1949 GTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACT 2008 Query 42003 TCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCA 42062 |||| | | | ||||| ||||||||||||||||| | | | || || || | Sbjct 2009 TCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTA 2068 Query 42063 TGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCT-GCTAGCTGCTGATGGACAG 42121 |||| || ||||| |||||||||||||| ||||||||| | | | | || | || | Sbjct 2069 TGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGC-CAAGGTCGT 2127 Query 42122 GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCAT 42181 || || ||||| |||||||| || |||||||||| ||| | || | || || |||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 42182 GAGCGGAACGCACACAACTTCCC 42204 ||||| ||||| ||||||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCC 2210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146209166803856