Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq250 484 2e-132 >seq250 Length=47047 Score = 484 bits (536), Expect = 2e-132 Identities = 684/954 (72%), Gaps = 8/954 (1%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | |||||| | ||| | || ||||||||||| | |||||||| | | | Sbjct 1261 ACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCTACATTATTAACA 1320 Query 42370 GCTACCACCTGTTTT-ATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 ||||| | ||| || || | || ||| ||||||| ||||| || || |||||||| || Sbjct 1321 GCTACTTC-TGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGATATTGATGGTAT 1379 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 |||||||| || |||| ||| | || || || |||||||| ||||||||||| || | Sbjct 1380 CCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCTGGTGCTGTTAT 1439 Query 42489 GCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 || || | || ||||| | || || || | || |||||||| | | | || Sbjct 1440 TCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGA 1499 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 ||| ||| | ||||| || || || | || |||| || ||||| | | ||| | Sbjct 1500 CGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTTTTACTAGGTGT 1559 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 | ||| |||| || || ||||||||| ||||| | || ||| | || ||||| Sbjct 1560 TGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGAT 1619 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 | |||||| | |||||| || || || || || ||||| || ||| | |||| || | Sbjct 1620 CGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTGATCTACCCGAT 1679 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 ||| ||||| || || ||||| |||||| | || ||||| ||||| ||||||||||| Sbjct 1680 TGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTCAACTTCAT 1739 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || ||||| ||||| ||||||||||| ||||| || ||||| | |||||||| Sbjct 1740 GATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAATTAGGTGTTGC 1799 Query 42849 CGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCT 42908 || ||||||||||| || | ||| |||||||| ||| || || || ||| | | Sbjct 1800 TGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTAACTTCTAGTTT 1859 Query 42909 TGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGA 42968 | |||||||| |||||||| ||| || ||||| ||||||||||||||||| || Sbjct 1860 AATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTCGGTCAAGAAGA 1919 Query 42969 GGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 || ||||||||||||||||| || |||||||||||||| || | || ||||||||||| Sbjct 1920 AGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATATTCCAATATGC 1979 Query 43029 GTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGA 43087 | |||| || || ||| || | |||||||| | | ||||| ||||| || | Sbjct 1980 -TAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCAGTTGTAGGTA 2038 Query 43088 TTTGGTTCACTTC--TCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTT 43145 ||||||| || || ||| | ||| ||||||||||||||||| |||||||| ||||| Sbjct 2039 TTTGGTTAACATCTATCTCTGTATCA--ACTATGGCGTTTAACTTAAATGGTTTCAACTT 2096 Query 43146 TAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAA 43205 |||||||| | ||||| | || || ||| || |||||||||||||| | || Sbjct 2097 CAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGCTGATATCATTAA 2156 Query 43206 TCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259 ||||| ||| | || | || || ||||| ||||| || || || |||||||| Sbjct 2157 CCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCC 2210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143527662781672