Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq250 444 2e-120 >seq250 Length=47047 Score = 444 bits (492), Expect = 2e-120 Identities = 713/1015 (70%), Gaps = 8/1015 (1%) Strand=Plus/Minus Query 25840 TGGGGCTGATAGTGCAACTTGTGTTGACTCAGATGATGCTAAGTCAAGTGGAAAGTTATG 25899 ||| |||| || |||||| || || ||| || |||||||| | ||| ||||| || Sbjct 2259 TGGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTG 2200 Query 25900 AGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCA 25959 ||| |||||||| ||||||||||| | || | |||||| ||||| | | ||||||||| Sbjct 2199 AGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCAGCCCA 2140 Query 25960 TGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTAG 26019 || |||| || | || ||||| || ||||| ||||| |||||||||| Sbjct 2139 AGTGTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATTTAA 2080 Query 26020 GTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGT 26079 |||||| ||||| || | | | |||||||| | ||| || || ||||| ||||| Sbjct 2079 GTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCATAA 2020 Query 26080 AGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCT 26139 | | | ||||| ||||| ||||| ||| || ||||| ||||| || || ||||| | Sbjct 2019 ACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAAACG 1960 Query 26140 CCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATA 26199 |||||||| || |||||||| ||||| ||||| || ||||| ||||| || ||||| || Sbjct 1959 ACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTTGTA 1900 Query 26200 GCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAAC 26258 ||||| || || | | || || ||||| | | ||| || |||| || | Sbjct 1899 ACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAG-AAGTTACTAGTG 1841 Query 26259 TTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGA 26318 |||||||||||| ||| |||| |||||| || || ||||||||||| |||| Sbjct 1840 AACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTGGA 1781 Query 26319 ATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAG 26378 |||||||||| || || ||||| || ||||||||||| | ||| ||||| || ||||||| Sbjct 1780 ATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACCAG 1721 Query 26379 AGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACA 26438 | ||||| | |||||| |||||| || || ||||| || | || || | ||||| | Sbjct 1720 AAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAATA 1661 Query 26439 CTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTA 26498 | || || || | | ||| || | |||||||| ||||| || | ||| |||| Sbjct 1660 CAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACCTA 1601 Query 26499 GTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTCCTATTAAGAAGTG 26556 | ||| |||||||||| | || ||| | || || || |||| ||| ||||| Sbjct 1600 AACGGTAGCTAAGTTCCCACTCACGACC--CATGTAGCAAGCAACACCTAGTAAAAAGTG 1543 Query 26557 GAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTC 26616 || | || || | || || || ||||||| ||||||||| | | ||||||| Sbjct 1542 TAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTC 1483 Query 26617 CCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATAT 26676 ||| || ||||| || || | || || || ||| || | || || || || || Sbjct 1482 CCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAGAGAT 1423 Query 26677 TATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTAC 26736 || ||||| ||||| | ||| || || | |||||| ||||| || ||||| ||||| || Sbjct 1422 AATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATATCAAC 1363 Query 26737 AGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATGTAGTGGCTGCGAGTAAGCAGGGTA 26795 || || || || | ||| |||| || || ||| | ||| |||| | ||| || | Sbjct 1362 TGGAGGAGCAGCAACGAATGCAATGATGAATACA-GAAGTAGCTGTTAATAATGTAGGAA 1304 Query 26796 TCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 |||| | || || ||||| || | ||| | |||||| ||||| ||||||||||| Sbjct 1303 TCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTAACCCA 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147706713202880