Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq250 594 1e-165 >seq250 Length=47047 Score = 594 bits (658), Expect = 1e-165 Identities = 744/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 40494 GCAGGAGCTGTAAGTGCAACCTCTGTTGACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTG 40553 || |||||||| | |||||| | || ||| |||| |||||||||| || |||||| Sbjct 2261 GCTGGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTTG 2202 Query 40554 TGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCC 40613 |||||||||||||| ||||| ||||||||||||| | | ||||| | ||||||| Sbjct 2201 TGAGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCAGCC 2142 Query 40614 CAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAACCATT 40672 ||||| ||| || ||| || || ||| ||||| || ||||| ||||| |||||||| Sbjct 2141 CAAGTGTTAATTACACGACC-TTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATT 2083 Query 40673 GAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAA 40732 | |||||| |||||||| |||| | || || || | ||| || || | ||| || | Sbjct 2082 TAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCA 2023 Query 40733 AGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAG 40792 ||| | |||||||| || | ||| |||||||| ||||||||| ||||||| Sbjct 2022 TAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAA 1963 Query 40793 TCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTT 40852 | |||||||||||| |||||||| || ||||||||||| || |||| ||||| ||||| Sbjct 1962 ACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTT 1903 Query 40853 ATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAG 40912 || || ||||| |||||| |||| || || || || || | ||||| || || Sbjct 1902 GTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACTAG 1843 Query 40913 GCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATG 40972 |||||||||||| || | || |||||||| || || ||||| || | || Sbjct 1842 TGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTG 1783 Query 40973 GAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCC 41032 |||||||||||| |||||||| || || |||||||| |||| ||||||||||||||| || Sbjct 1782 GAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACC 1723 Query 41033 ACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAA 41092 | || ||||||||||||||||||||||| || ||||| | || || | ||||| Sbjct 1722 AGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAA 1663 Query 41093 TACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACC 41152 |||||| || |||| | |||||| | | |||| ||| ||||| || | |||||| Sbjct 1662 TACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACC 1603 Query 41153 TAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTG 41212 || | ||| ||||||||||| | ||| ||| || || |||| ||||||||| Sbjct 1602 TAAACGGTAGCTAAGTTCCCACTCACGACCCATGTAGCAAGCAACACCTAGTAAAAAGTG 1543 Query 41213 AAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTC 41272 || || || || | || || |||||||||| ||||||||| | | | ||||| Sbjct 1542 TAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTC 1483 Query 41273 CCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATAT 41332 ||| ||||||||||| || | || || || ||| || |||| ||||| ||||| || Sbjct 1482 CCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAGAGAT 1423 Query 41333 AATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTAC 41392 ||| ||||| ||||| | ||| || || | ||| || ||||| || ||||| ||||| || Sbjct 1422 AATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATATCAAC 1363 Query 41393 AGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAA 41451 || || || || | || || || ||||| ||| | ||||| |||| ||||| |||| Sbjct 1362 TGGAGGAGCAGCAACGAATGCAATGATGAATACA-GAAGTAGCTGTTAATAATGTAGGAA 1304 Query 41452 TCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCA 41506 |||||| |||||||||||||| | |||| ||||| || ||||| || ||||| Sbjct 1303 TCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTAACCCA 1249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143697256711476