Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq250 679 0.0 >seq250 Length=47047 Score = 679 bits (752), Expect = 0.0 Identities = 754/1000 (75%), Gaps = 8/1000 (1%) Strand=Plus/Minus Query 67326 GGTGCAGTAAGTGCAACAGGCACAGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGA 67385 || || || | ||||||||| | ||| ||| ||| || | ||| | |||||||||||| Sbjct 2258 GGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTTGTGA 2199 Query 67386 GCGTTACGCTCGTGCATAACTTCCATTCC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCA 67444 ||||||||||| |||||||||||||| || |||| || | ||||| ||| || ||||| Sbjct 2198 GCGTTACGCTCATGCATAACTTCCATACCTAAGTTA-GCACGGTTAATGATATCAGCCCA 2140 Query 67445 AGTAGGAATCACTTTACCACCT--GC-GTCAACGACGGATTGGTTGAAGTTGAAACCGTT 67501 ||| ||| || || |||| || |||||| || |||||||||||||||||||| || Sbjct 2139 AGTGTTAATTAC---ACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATT 2083 Query 67502 GAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAA 67561 | ||| || ||||||||||| ||| || | || ||||| || | || || || | Sbjct 2082 TAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCA 2023 Query 67562 TGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAA 67621 | | | | |||||||||||| | |||||||||||| ||||| ||||| || || Sbjct 2022 TAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAA 1963 Query 67622 GCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTT 67681 ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| Sbjct 1962 ACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTT 1903 Query 67682 GTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAG 67741 |||||| ||||| || || | ||||| ||||| | ||| | | |||||| || || Sbjct 1902 GTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACTAG 1843 Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 ||||||||||||||||| || || || ||||| |||||||| || || || | || Sbjct 1842 TGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTG 1783 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||| || ||||| ||||| |||||||| || | |||| |||| || ||||| Sbjct 1782 GAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACC 1723 Query 67862 AGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAA 67921 ||||||||| | |||||| | |||||||| |||||||| | || |||| |||||| Sbjct 1722 AGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAA 1663 Query 67922 CACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACC 67981 ||||| ||| || | |||||||||||| |||| ||| |||||||||||||||||| Sbjct 1662 TACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACC 1603 Query 67982 AAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTG 68041 | |||||| ||||||||||| |||||| ||| | | || | | ||||| Sbjct 1602 TAAACGGTAGCTAAGTTCCCACTCACGACCCATGTAGCAAGCAACACCTAGTAAAAAGTG 1543 Query 68042 GAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTC 68101 || || | || || | ||||| || || |||||||| |||| || || ||||| Sbjct 1542 TAATACGATTAGAGGGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAGCTTC 1483 Query 68102 CCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAAT 68161 ||| || || |||||||||| ||| || || ||||| |||| |||||||||||| || Sbjct 1482 CCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAGAGAT 1423 Query 68162 GATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAAC 68221 |||||||||||||| | | ||||| ||||| ||||| | ||||||||| |||||||| Sbjct 1422 AATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATATCAAC 1363 Query 68222 TGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAAT 68281 |||||| || |||| ||||||||||||||| || | |||| | || |||||| Sbjct 1362 TGGAGGAGCAGCAACGAATGCAATGATGAATACAGAAGTAGCTGTTAATAATGTAGGAAT 1303 Query 68282 CATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 ||| || ||||| |||||||| | ||| | || || ||| Sbjct 1302 CATTAATACACCAAACCAACCGATATATAAACGGTTTTCA 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566925840264240