Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq250 691 0.0 seq316 542 3e-149 seq400 98.7 1e-15 >seq250 Length=47047 Score = 691 bits (766), Expect = 0.0 Identities = 775/1028 (75%), Gaps = 10/1028 (1%) Strand=Plus/Minus Query 67803 AGCGGGTGCCGTCAGTGCCACGGGTGTGGACTCAGCAGCAGCAAGGTCGAGAGGGAAGTT 67862 ||| || || || | ||| || ||| || ||| ||| || | ||| | |||||||| Sbjct 2262 AGCTGGAGCTGTTAATGCAACAGGTAGAGATTCACCAGACGCTAAGTCTAATGGGAAGTT 2203 Query 67863 GTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTCTGC 67922 ||| ||||||||||||||||||||||||||||| || ||| ||||| | | || || Sbjct 2202 GTGAGCGTTACGCTCATGCATAACTTCCATACCTAAGTTAGCACGGTTAATGATATCAGC 2143 Query 67923 CCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACCATT 67982 ||| || | || ||| || |||| | ||| |||||||||||||||||||| Sbjct 2142 CCAAGTGTTAATTACACGACCTTGGCTGTCAACTACAGATTGGTTGAAGTTGAAACCATT 2083 Query 67983 CAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCA 68042 | ||| || ||||| || ||| | | || ||||| ||||| || || ||||| Sbjct 2082 TAAGTTAAACGCCATAGTTGATACAGAGATAGATGTTAACCAAATACCTACAACTGGCCA 2023 Query 68043 TGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAG 68102 | | | | ||||||||| || ||||| ||||||||||| ||||| ||||| || | Sbjct 2022 TAAACCTAAGAAGAAGTGAAGTGAACGAGAGTTGTTGAAACTAGCATATTGGAATATTAA 1963 Query 68103 ACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTT 68162 |||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1962 ACGACCAAAGTAACCATGTGCAGCAACAATGTTATAAGTTTCTTCTTCTTGACCGAACTT 1903 Query 68163 GTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAG 68222 |||||||||||| || ||| ||||||| |||||||| | | |||||| || || Sbjct 1902 GTAACCATAGTTAGCAGATTCATTTTCAGTTGTTTCACGGATTAAACTAGAAGTTACTAG 1843 Query 68223 GGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATG 68282 ||||| ||||| |||||||| ||||||||||||||||| |||||||| || | || Sbjct 1842 TGAACCGTGCATAGCACTGAATAGAGATCCACCAAATACACCAGCAACACCTAATTGGTG 1783 Query 68283 GAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACC 68342 ||| |||||||| || ||||| ||||| |||||||| || | |||| ||||||| ||||| Sbjct 1782 GAATGGGTGCATTAGAATGTTATGCTCAGCTTGGAATACAATCATGAAGTTGAATGTACC 1723 Query 68343 AGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAA 68402 |||||| || | |||||| | |||||||| |||||||| | || |||| || ||| Sbjct 1722 AGAAATACCTAAAGGCATACCATCAGAGAAGCTGCCTTGACCAATCGGGTAGATCAAGAA 1663 Query 68403 GACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACC 68462 || || | ||| |||||||| || |||||| |||||||| |||||||||||||||||| Sbjct 1662 TACAGCAGTTGCAGCTGCAACTGGAGCAGAGAATGCAACAGCGATCCAAGGACGCATACC 1603 Query 68463 AAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAA-AGATACCAATCAGGAAGT 68521 | ||| ||| ||||||||| ||||| |||||||| |||| | ||| | | |||| Sbjct 1602 TAAACGGTAGCTAAGTTCCCACTCACGACCCATGTA-GCAAGCAACACCTAGTAAAAAGT 1544 Query 68522 GAAA---GATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTG 68578 | || ||||| ||| || | ||||| ||||| |||||||| || | | || | Sbjct 1543 GTAATACGATTA-GAG--GGTAGCACCCACCGTTGTATAACCACTCGTCTAAAGAAGCAG 1487 Query 68579 CTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAG 68638 |||||||||| || || ||||||| |||||| ||| ||||| |||| ||||||||||| Sbjct 1486 CTTCCCAAATTGGGTAGAAGTGAATACCAATAGCAGCAGAACTTGGAATAACAGCACCAG 1427 Query 68639 AAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGT 68698 | || ||||||||||| || || | ||||||||||| |||||||| |||||||| || | Sbjct 1426 AGATAATGTTGTTACCGTATAGTAAAGAACCAGCAACTGGTTCACGGATACCATCAATAT 1367 Query 68699 CCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTA 68757 | || || |||||||| | ||| || | |||||| ||||| || |||| | | ||| Sbjct 1366 CAACTGGAGGAGCAGCAACGAATGCAATGATGAATACAGA-AGTAGCTGTTAATAATGTA 1308 Query 68758 GGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCAT 68817 || ||||| | || || |||||||| | || | ||||| || ||| || ||||| Sbjct 1307 GGAATCATTAATACACCAAACCAACCGATATATAAACGGTTTTCAGTGCTTGTAACCCAA 1248 Query 68818 TCGCAGAA 68825 |||||| Sbjct 1247 GAGCAGAA 1240 >seq316 Length=14323 Score = 542 bits (600), Expect = 3e-149 Identities = 751/1037 (72%), Gaps = 16/1037 (2%) Strand=Plus/Minus Query 66584 TTATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGG 66643 ||||||||| || || ||||| |||||||| || |||||||||| |||||||||||| || Sbjct 11174 TTATTAAAGGGCGTTTCCACGTGGCAGAACCTCCTCTGGGAATATAAAGTTTTCATGAGG 11115 Query 66644 TTGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTA 66703 ||||| | |||| ||||||||||| |||||| ||||||||||| || || || || Sbjct 11114 CTGATCTTGTGCAGCCATCCATGCACGAATACCTTCGTTCAATAGAATATTTTTAGTATA 11055 Query 66704 GAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGC 66763 ||| || || || || || || ||||| ||||| | || || ||||||||||||||||| Sbjct 11054 GAATGTTTCAAATTCAGGATCCTCTGCGGCTCTAAGTTCCTGAGATACAAAGTCATAAGC 10995 Query 66764 ACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGG 66823 | | || | || | || | ||| || || ||||||||||| | ||| |||| || Sbjct 10994 TCTTAAATTTAATGCTAATCCTACAATGCCAATTGAACTTGTCCACAAACCAGTAACTGG 10935 Query 66824 AACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTG 66883 |||||||||||||||||||| | ||| || || || ||| |||| |||||| || || Sbjct 10934 TACAAACAACATAAAGAAATGTAGCCATCTTTTGTTAGAAAAAGCAACACCAAAAATTTG 10875 Query 66884 AGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAG-AGTCGA 66942 ||||| || |||||||| || |||||||| || |||||||| |||||| | ||| | Sbjct 10874 TGACCAAAAACGGTTTGCTGTTACCATTGAATATGTTTCTTCAGATTGAGTTGGAGTAAA 10815 Query 66943 ATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACAC 67002 | ||| | || |||| || |||||||||||| | | ||||| || || ||| ||| Sbjct 10814 A-GCTCTAAATGTGTCCGCAGCGTCACCATCTTCAAATAAGGTATTTTCAACAGTAGCAC 10756 Query 67003 CATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACG 67062 |||| || ||| | | || |||||||| || ||||| ||||||||||||||||| || | Sbjct 10755 CATGGATAGCACATAATAAGGCACCACCAAGAATACCAGCTACACCCATCATATGGAATG 10696 Query 67063 GGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGA 67122 | || || ||||||||||| || || |||| ||| | | |||| |||||| || | | Sbjct 10695 GATTTAACGTCCAGTTATGAAAACCCTGTAAGAATAATAAAAATCTAAAGATGGCAGCAA 10636 Query 67123 CCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACAC 67182 | || ||| ||||| ||||||||||| | ||| || | ||| || || | ||| || Sbjct 10635 CACCAAAACTAGGAGCAAAAAACCAACTAGCTTGGCCTAAAGGATACATTAAAAATACTG 10576 Query 67183 TAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGA 67242 || || |||| ||||| || || || |||||||| || || || | | ||| | | Sbjct 10575 ATACGAACACAGATATAGGTCCTGAAAAAGCAATAGCGTTATAAGGTCTCAAACCCACAA 10516 Query 67243 GACGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 | | ||| | |||||||| || || || ||||| ||||| | ||||| || || | Sbjct 10515 GTCTTGCAATCTCAAACTGACGTAAACAA-AAACCTATTAGTCCAAAAGCGCCATGTAAA 10457 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || | |||| |||| || || || | || ||| | |||||| || |||| || Sbjct 10456 GCTATAAAAGTCCAAAGACCACCTATCTGACACCATCTTGTGAAATCGCCTTGAGCTTCT 10397 Query 67362 GGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGC 67420 || ||||| ||| | || || ||| || |||||| || ||| || ||||| || || || Sbjct 10396 GGTCCCCACAAGAATAATAA-AGAGTGTCCCATACTATTAGCTGGAGTTGAAACTGCAGC 10338 Query 67421 TGTGAGAAAATTAGCACCCTC-AAG-AT-AACTAGACGCGAGTCCGTGAGTGTACCAGCT 67477 ||| | || ||| ||| || ||| || |||| | | | || ||||| ||||| Sbjct 10337 TGTTAAGAAGTTACAACCTTCTAAGTATGAACTTG---CTAAACCATGAGTATACCAAGA 10281 Query 67478 TGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATA--AGCAGTGGGAAAA 67535 ||| ||||| ||||| || |||||||| ||||| | || | ||| |||| || | Sbjct 10280 TGTTACAAAAGTAGTTCCTGTAAGCCATCCACCTAAGGCAAGATATGAGCAA--GGCAGT 10223 Query 67536 AGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGG 67595 || | || ||||||||||| | || ||||| || |||| || | ||||||||| | Sbjct 10222 AGCAATAAACCAGACCAACCTATGAAAACAAAACGGTCTCTCTTCAACCAGTCATCTATA 10163 Query 67596 ACATCGAACCACCCCCG 67612 | ||| ||||| || || Sbjct 10162 AGATCAAACCATCCACG 10146 >seq400 Length=4522 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 |||||| ||||||||| ||||||||||||||||||| ||||||| |||| ||||| || | Sbjct 3786 AACTCCTCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATTGCTCTACCAC 3845 Query 35569 TGAGCTACTGAGGA 35582 ||||||||| |||| Sbjct 3846 TGAGCTACTAAGGA 3859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572032847850480