Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq181 127 6e-24 seq2725 102 2e-16 seq2016 96.9 1e-14 >seq181 Length=69431 Score = 127 bits (140), Expect = 6e-24 Identities = 338/506 (67%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || ||||| | | ||| || | ||||| ||||| || || || || ||| Sbjct 14177 CTATCGAATCTACCTGGCCTTAGTAAAGCGGAATCTAAAATATCTGCCCTATTAGTCGCT 14236 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || |||| |||||| | || | || |||||||||||| ||| || |||||| Sbjct 14237 GC-AATA--ACAATAACACCAGTATTTCCCTCAAATCCATCCATTTCTGTCAACATTTGA 14293 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | ||||| || || |||||||| || | | || ||| | | | | || Sbjct 14294 TTCAAAGTTTGCTCTCTCTCATCATTACCGCCACCT--AT-ACCTGTACCACG---TTGG 14347 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||||||| ||||| || | | || || | ||| | | || || Sbjct 14348 CGCCCAACAGCATCAATTTCATCAATAAATACAATGCAAGGTGCATTAGCTTTTGC--TT 14405 Query 289087 GC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 || |||||| || | ||| | || || || | |||||| ||||||| |||||||||| Sbjct 14406 GCTTAAATAAATCACGTACTCTAGAAGCACCTACGCCAACAAACATTTCAACAAATTCAG 14465 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | || || || || | ||| || || ||||||| || |||||| | | Sbjct 14466 AACCTGAAACACTAAAAAAAGGAACACCGGCCTCCCCTGCTATGGCTTTCGCCAATAAAG 14525 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | ||||||||||| || || || |||||| ||||| || |||||| |||| || | Sbjct 14526 TTTTACCTGTTCCTGGAGGCCCAACTAATAATACTCCTTTAGGTACTGTTGCACCTAAAT 14585 Query 289265 ACTTATATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || | |||||| |||| | |||| || || | ||| | || || | || || Sbjct 14586 CTGTAAAAACCTCAGGTTTCTTAAGAAAAGTC-ACTACTTCTTGAAACTCCTCCTTGGCT 14644 Query 289324 TCATCACATCCTGCTACATCAGCAAA 289349 |||||| || || |||||| |||| Sbjct 14645 TCATCAACCCCAGCAACATCATCAAA 14670 >seq2725 Length=19496 Score = 102 bits (112), Expect = 2e-16 Identities = 192/280 (69%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||||||||| |||||| | || ||||| || || || || | |||||| Sbjct 11240 CATCAGGTCTTCCATCGCCTTGATCAGGCGTCGCTGGATGTAGCCTGTCTCGGCTGTTTT 11181 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || ||||| ||||| |||| || ||||| || |||||||| | ||| || Sbjct 11180 GACCGCAGTGTCAATGAGACCCTCACGGCCGCCCATTGCGTGGAAGAAAAACTCGGTGGG 11121 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || || | | | ||| |||| || || || || | ||| || | |||| Sbjct 11120 -CGTCAGGCCGCGCAAGTATGAGTTCTCCACAAAGCCGCGGGACTCTGGTCCAAGGTCGT 11062 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||| ||| || ||||| || | | | | ||||||| | || ||||| || || | Sbjct 11061 CCTTGTGAAAATGAGGCAGCGTACGGCGCGTAAAGCCGTACGCAATGCGCTTACCTTCCA 11002 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| || | ||||| | ||||| ||||| || Sbjct 11001 CGTTCTGCTGGCCTACGCACGCACAAATCTGAGAAATGTT 10962 >seq2016 Length=8234 Score = 96.9 bits (106), Expect = 1e-14 Identities = 187/273 (68%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 60097 GTCGTCAATTTCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCT 60156 |||||| |||| ||||| | ||| || || | ||||| ||| |||| ||||| || | Sbjct 5477 GTCGTCCTTTTCTGGAAACAAAGCACGCGTGACCTTGGCCAATCGTGTAAAAATGTAACG 5418 Query 60157 CTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAA 60216 | | || |||||||| || || || || |||||||| ||||| || ||| | Sbjct 5417 CGCCGACGCTGCGTCTTTACCTCCTTGCAGCCGGGTTCCGAATTGACCAGACGGCACAAG 5358 Query 60217 TAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAG-CACCATTTA 60275 | ||||||||||| | || || || || || || || || || || | | ||| Sbjct 5357 CAAGTTAATGTTGTTGGCACCGACAAAGTTCTGCGCAAGCCCGACGATCGTCGACATG-- 5300 Query 60276 AACTG--GCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGC 60333 | || || || ||||||||||| | | ||| || || ||||| || || || || Sbjct 5299 -AGTGAAGCCTCGCCGTGATGATAAGCCGCATGCTCCGACACATAACCGGCGAGCTGCGC 5241 Query 60334 GACTTTAATTTCGGAGTGGAGTTTTTTCTTGAA 60366 || |||||||| | | ||||||| ||||||| Sbjct 5240 CACCTTAATTTCAGTCTTGAGTTTTCTCTTGAA 5208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760763003718