Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq250 693 0.0 seq316 540 1e-148 >seq250 Length=47047 Score = 693 bits (768), Expect = 0.0 Identities = 776/1031 (75%), Gaps = 6/1031 (1%) Strand=Plus/Plus Query 157571 TGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 157630 |||||| ||||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 157631 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGT 157689 || ||| | |||||||| || | || |||| || ||||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 157690 CGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 157749 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 157750 TGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTT 157809 ||||||||||| ||||||||||| ||| | ||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 157810 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 157869 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 157870 ACTCGTAGTATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAA 157927 || | ||||| ||||| | | ||| | || ||| |||||||| |||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 157928 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCT 157987 ||| ||||||||||||||||| || |||||| ||| |||| ||||||||||| || Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 157988 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATG 158047 || ||| ||||||||||| | |||| || | |||||||| ||||| |||| |||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 158048 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATC 158107 ||| | ||||| |||||||| || |||| |||| ||||||||||||| || || ||||| Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 158108 CTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCT 158167 || |||||||| ||||| | ||||||||||| ||||| ||||||||||| ||| | Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 158168 GCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCA 158227 ||||||||||| || || ||||| | | |||||||| ||||||| || || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 158228 CAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACAT 158287 ||||| |||||||||||||||||||| ||||| || |||||||| || || |||||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 158288 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 158347 || ||||| |||||||| || |||||||| ||| ||||||||||| ||||| | ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 158348 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACG 158407 |||||| | | | |||||| ||||| || || ||||| || | | || || || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 158408 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158467 ||||| || ||| | || ||||||||||||||||| || | |||| | || |||||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 158468 GTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 158527 || | ||||| ||||| ||| | | ||||| ||| | |||||||||||||||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 158528 GAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCAACTCCTGTTGCA 158587 ||||||||||| |||||||||||| | ||| | || ||| ||| || ||||||||| Sbjct 2188 GAGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 Query 158588 CTTTCAGCACC 158598 | |||| || Sbjct 2248 TTAACAGCTCC 2258 >seq316 Length=14323 Score = 540 bits (598), Expect = 1e-148 Identities = 740/1029 (72%), Gaps = 6/1029 (1%) Strand=Plus/Plus Query 159288 GGGTGGTTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 159347 || ||||| || | | ||||||||| | || |||| || |||||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 159348 TCTGGACTACTACTTCTTCCCACTGCT--TATCTGGCCATTGGCGGTTGGCTTACTGGCA 159405 ||||| || | || || || |||| ||||| ||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 159406 CAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTA 159465 | ||||||| || |||||| || || ||| | || ||||| || | || ||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 159466 ACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTAC 159525 |||| | ||||| || || || || || ||| | |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 159526 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGG 159584 || ||||| || || |||| || ||||| | ||||| || | || || | ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 159585 AATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAA 159644 | |||| | || | || || || || | ||||| ||||| | ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTTTTGTTTACGTCAGTTTGAG 10505 Query 159645 CTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCT 159704 | ||| | || | ||| | | ||||| || |||||||| || || || ||||| || Sbjct 10506 ATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCT 10565 Query 159705 GTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCG 159764 || || || || || | || || || || || || | ||||||||||| ||||| Sbjct 10566 GTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCT 10625 Query 159765 TCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGG 159824 ||||| || || || ||||||||||| | || ||| | || || ||||| |||||| Sbjct 10626 AGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGG 10685 Query 159825 ACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGT 159884 ||||||||||| |||||||||||||| || |||||||| || ||||| || || | || Sbjct 10686 ACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGT 10745 Query 159885 GCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 159944 || |||||||| | |||||| || || || | | ||||||||| || || | || Sbjct 10746 GCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACACA 10805 Query 159945 TTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGC 160004 |||| || ||| | |||||||| || || || || || ||||| || |||||||| Sbjct 10806 TTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCGT 10865 Query 160005 TTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATG 160064 || ||||| || || || ||| |||| ||||||||||| | ||||| |||||||| ||| Sbjct 10866 TTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTATG 10925 Query 160065 TTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTT 160124 |||||||| || |||| ||| | |||||| || ||||||||| | || | || | Sbjct 10926 TTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCATTA 10985 Query 160125 AATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTT 160184 ||| | | ||||| || || ||| ||| || | ||||| ||||| ||||| |||||| Sbjct 10986 AATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAATTT 11045 Query 160185 GAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCT 160244 || || ||||| || ||||| || |||||||||||||| | ||||||||| |||| | Sbjct 11046 GAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTGCA 11105 Query 160245 GCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCC 160304 ||||| || |||||||||||||| |||||||| || || |||| | || |||||| Sbjct 11106 CAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACGCC 11165 Query 160305 CTTTAATAA 160313 ||||||||| Sbjct 11166 CTTTAATAA 11174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548353739994480