Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq250 682 0.0 seq316 569 2e-157 seq181 102 9e-17 >seq250 Length=47047 Score = 682 bits (756), Expect = 0.0 Identities = 763/1014 (75%), Gaps = 8/1014 (1%) Strand=Plus/Plus Query 150848 TGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCA 150907 |||||||| ||| | |||||| | ||| |||||||||| ||||| | |||||||| Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 150908 ACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGAC 150967 || | || |||| || | |||||| | |||||| | |||||||| || || || Sbjct 1309 ACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGAT 1368 Query 150968 ATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCT 151027 || ||||| ||||||||||| |||||||||||| | | |||||||||||||| |||||| Sbjct 1369 ATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCT 1428 Query 151028 GGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCA 151087 ||||||||| |||| |||| ||||| ||| | |||||||| || || |||||||| Sbjct 1429 GGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCT 1488 Query 151088 GCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTC 151147 || ||| | || || ||| | ||||||||||| | || || | || || ||||| Sbjct 1489 GCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTT 1548 Query 151148 CTGATTGGTAT--CTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTA 151205 | | ||| | || |||| |||||||||||||||||||||| ||||| || |||| Sbjct 1549 TTACTAGGTGTTGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTA 1606 Query 151206 TGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCC 151265 ||||||| |||||| ||||||| ||||||||||||||| ||||| | ||| || ||| Sbjct 1607 TGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCT 1666 Query 151266 TCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCA 151325 | |||| || | |||||||| |||||||||| ||||| | ||||||||||| | Sbjct 1667 TGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTA 1726 Query 151326 CATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATA 151385 ||||||||| |||| |||| |||||||| ||||| |||||||| |||||||| ||||| Sbjct 1727 CATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACC 1786 Query 151386 TGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGG 151445 | ||||| |||||||| || |||||||| || ||| || ||||||||||| || | Sbjct 1787 AATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAG 1846 Query 151446 TTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGT 151505 | |||||| | | ||||| || || ||||| || || |||||||||||||||| Sbjct 1847 TAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGT 1906 Query 151506 TCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCA 151565 |||||||||||||||| || || ||||| ||||| ||||| ||||||||||||||| | | Sbjct 1907 TCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAA 1966 Query 151566 TCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGC 151625 | |||||||| ||| |||||||| || ||||| || ||||||||| | | ||||| Sbjct 1967 TATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGC 2026 Query 151626 CTGTTGTCGGTATCTGGTTCACTGC--ACTTGGTGTCAGCACCATGGCATTCAACCTGAA 151683 | ||||| ||||| ||||| || | || || ||| || ||||| || ||| | || Sbjct 2027 CAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCA--ACTATGGCGTTTAACTTAAA 2084 Query 151684 CGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGC 151743 ||||||||||||||||| || | | || | || || || | ||||| ||||| Sbjct 2085 TGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTGTAATTAACACTTGGGC 2144 Query 151744 AGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 151803 || | | |||||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 2145 TGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACAA 2204 Query 151804 CTTCCCTCTCGACCTTGCTGCTGCTGAGTCCACCCCTGTGGCACTCACCGCTCC 151857 |||||| | ||| | || ||| ||| || ||||| ||| | || ||||| Sbjct 2205 CTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCC 2258 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 |||| |||||| || ||||||| ||||| ||||||||||| ||| |||||||||||||| Sbjct 35104 CGGGATGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAA 35163 Query 148191 TCCTGCCACCCCGA 148204 ||||| || ||||| Sbjct 35164 TCCTGTCATCCCGA 35177 >seq316 Length=14323 Score = 569 bits (630), Expect = 2e-157 Identities = 750/1030 (73%), Gaps = 10/1030 (1%) Strand=Plus/Plus Query 152353 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGG 152412 || ||||||||| | | ||||||||| | |||||||||||||| ||||| | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 152413 TCTGGACTTCTTCTTTTTCCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGGA 152470 ||||| | | || | || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCCT--TGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 152471 CTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAA 152530 ||||||| | || |||||||||||| || || |||||||| || | || || | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 152531 ACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTC 152590 |||| | || || |||||||| |||||||| || |||||| || ||| || | ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 152591 -TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGG 152649 | ||||| || || |||||||| |||||| |||||| |||| | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 152650 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTGA 152708 ||||| | || | || || ||||| | ||||| ||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 152709 ACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 152768 | ||| | || | ||| | | || || || |||||||| || || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 152769 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 152828 ||| || || || ||| | || || ||| | || ||| | ||||||||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 152829 ATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTG 152888 ||| || || || || ||||| |||| | | ||| | || || || || ||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 152889 GACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTC 152948 ||| || ||||| || |||||||||||||| || |||||| | || || ||||| | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 152949 TGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACAC 153008 ||| || ||||||| ||| || || ||||| || | | |||||||||| || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 153009 TTTCAAAGCTTTCGACAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACC 153067 || | |||||| || | |||||| ||||| || ||||| ||||| || || |||| Sbjct 10805 ATTTAGAGCTTT-TACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 153068 GTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTA 153127 |||| ||||| || || ||||| |||||||| || ||| | ||||| |||||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 153128 TGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTC 153187 || |||||||||| |||| ||| | ||||| ||| ||||| || | || | || Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 153188 TCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAAT 153247 | ||| | | ||||| || ||||||||||| ||| | || || |||| |||||||||| Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 153248 TTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCAC 153307 |||| || |||||||| || ||||| || |||||||||||| ||||||| ||| |||| Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 153308 CTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACG 153367 | || || |||||||| ||||| | ||||| || ||||| ||||||| || |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 153368 CTCTGTGATA 153377 | || | ||| Sbjct 11164 CCCTTTAATA 11173 >seq181 Length=69431 Score = 102 bits (112), Expect = 9e-17 Identities = 146/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 151988 TTGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTA 152047 ||||| ||||||| ||||| || || ||||| || || ||||| |||||| | || Sbjct 20292 TTGTGCAGATGACGTATACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTCCGTA 20351 Query 152048 CTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGT-GGTACAGTTG 152106 ||||| | |||||||| || || |||| |||||||| | | | || ||||| ||| Sbjct 20352 TTCTTGCAGAGCTGGTGCGTGCTCTACTTGCGCTGGTAA-AGTATCAGAAGGTACGATTG 20410 Query 152107 ATCAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCT 152166 |||| |||||||||||| || ||||| || || | || | ||||| || | || | Sbjct 20411 ATCAATCTGACCAATCATTTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAACTT 20470 Query 152167 GTGTTGCATATCCAACTTCTGAT 152189 | || || ||||| || || ||| Sbjct 20471 GCGTAGCTTATCCTACATCAGAT 20493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549601692976080