Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq250 609 3e-169 seq316 553 2e-152 >seq250 Length=47047 Score = 609 bits (674), Expect = 3e-169 Identities = 746/1015 (73%), Gaps = 10/1015 (1%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||||| ||| |||||| || || | || | |||||||||||||| |||||||| || Sbjct 1249 TGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTTGGTGTATTAATGATTCCT 1308 Query 72304 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 72363 | |||| ||| || || ||||| | |||||| | |||||||||||||| ||| Sbjct 1309 ACATTATTAACAGCTACTTCTGTATTCATCATTGCATTCGTTGCTGCTCCTCCAGTTGAT 1368 Query 72364 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCT 72423 || || || ||| | ||||||||||| |||||||| |||| ||||||||||| |||||| Sbjct 1369 ATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATACGGTAACAACATTATCTCT 1428 Query 72424 GGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCA 72483 |||||||| ||||| ||| || || || | |||||||| || || |||||||| Sbjct 1429 GGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTTCTACCCAATTTGGGAAGCT 1488 Query 72484 GCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTC 72543 || || | ||||||||||| || ||||| || |||| || | | || ||||| Sbjct 1489 GCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCCTCTAATCGTATTACACTTT 1548 Query 72544 CTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATG 72603 | | || | || |||||||||| | |||||||||| ||| | |||| ||| Sbjct 1549 TTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATG 1608 Query 72604 AGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTT 72663 | |||||||| ||| |||| ||| || || || | || ||| ||| |||||| | Sbjct 1609 CGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGCTGCAACTGCTGTATTCTTG 1668 Query 72664 GTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACG 72723 | || || | ||||| || ||||||||||||||||| ||||||| || ||||| Sbjct 1669 ATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACA 1728 Query 72724 TTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATG 72783 |||||||||||| | || |||||||| || || ||||| ||||||||||| ||||| Sbjct 1729 TTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCTAATGCACCCATTCCACCAA 1788 Query 72784 GCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTT 72843 |||||| || ||| | || ||||| ||| |||||||| |||||||||||||| || Sbjct 1789 TTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGCTATGCACGGTTCACTAGTA 1848 Query 72844 ACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTC 72903 ||||| | ||||| | || ||||| || || || | ||||| || || |||||| Sbjct 1849 ACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCTGCTAACTATGGTTACAAGTTC 1908 Query 72904 GGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATC 72963 || |||||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| Sbjct 1909 GGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATGGTTACTTTGGTCGTTTAATA 1968 Query 72964 TTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCT 73023 ||||| ||||| |||||||||||||||||| | ||||||||| | | | ||| || Sbjct 1969 TTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACTTCTTCTTAGGTTTATGGCCA 2028 Query 73024 GTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGA 73083 || || || | |||||||| || || | | | || ||||| || ||| | || || Sbjct 2029 GTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTATGGCGTTTAACTTAAATGGT 2088 Query 73084 TTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA--TGGG 73138 ||||||||||||||||| ||||| || | | ||| | || | |||| |||| Sbjct 2089 TTCAACTTCAACCAATC---TGTAGTTG--ACAGCCAAGGTCGTGTAATTAACACTTGGG 2143 Query 73139 GAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACA 73198 ||| | ||||| | || ||| | || ||||||||||||||||| | || || |||| Sbjct 2144 CTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATGAGCGTAACGCTCACA 2203 Query 73199 ACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACAGTTGCATTAACTGCACC 73253 |||||||| ||||| |||| |||| ||| ||| | | ||||||||||| || || Sbjct 2204 ACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCATTAACAGCTCC 2258 >seq316 Length=14323 Score = 553 bits (612), Expect = 2e-152 Identities = 751/1044 (72%), Gaps = 25/1044 (2%) Strand=Plus/Plus Query 73360 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 73419 ||||||||| || | ||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 10151 ATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGGTC 10210 Query 73420 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 73479 |||| | || || | ||||| | || || || | || || ||| | ||||||||| Sbjct 10211 TGGTTTATTGCTACTGCCTTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAACTAC 10270 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTT 73539 ||| || || || ||||| || |||||| | ||| ||||| | || || || || Sbjct 10271 TTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTAACTT 10330 Query 73540 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTG 73599 ||||| || ||||| ||||| || | | || |||||| || | |||| ||| | || Sbjct 10331 CTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCTTTATTATTCTTGTG 10390 Query 73600 GGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 73659 ||||||||| || ||||| ||| | | |||||| ||| ||||||| || |||| || Sbjct 10391 GGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGGACTTT 10450 Query 73660 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTG 73718 | |||| |||||||| | |||||||| |||||||| || ||| | ||||||||||||| Sbjct 10451 TATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGAGATTG 10509 Query 73719 CAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTAT 73778 || ||||||| || | | ||||| ||||| | |||||||||| | ||| | || | Sbjct 10510 CAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATCTGTGT 10569 Query 73779 TCACGAGCA-TCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCA 73837 || | || | ||| |||| ||||||||||| || ||||||||| || || ||| Sbjct 10570 TC-GTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCCTAGT 10628 Query 73838 TTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACT 73897 || ||||| || || |||||| | | | | |||||| |||||||||| || || || Sbjct 10629 TTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTGGACG 10688 Query 73898 CTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCC 73957 | |||||||| ||||||||||||||||| ||||| |||||||| || ||| ||||||| Sbjct 10689 TTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATGTGCT 10748 Query 73958 ATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGT 74017 || |||||||| || || | || || || | |||||| || | Sbjct 10749 ATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGA---------------TG--GTG 10791 Query 74018 AAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGT 74077 | | | | | || || ||||| || ||| || || ||||| || ||| Sbjct 10792 ACGCTGCGGAC----ACATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCA 10847 Query 74078 ATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGA 74137 ||| | || || ||| | || |||||||| || |||||| | || ||||| ||||||||| Sbjct 10848 ATGGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGA 10907 Query 74138 TTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGT 74197 | |||| ||| |||||||||| ||||| || | ||| |||||||| || || || Sbjct 10908 TGGCTACATTTCTTTATGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGC 10967 Query 74198 ATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 74257 || ||||| ||||| | || | ||||| || |||||||||||||| || | ||||| Sbjct 10968 ATTGTAGGATTAGCATTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCC 11027 Query 74258 GCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATG 74317 ||||| || || || |||||||| ||||| ||||| || ||||| | || |||||||| Sbjct 11028 GCAGAGGATCCTGAATTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATT 11087 Query 74318 AGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTC 74377 | ||||||||| | | ||||| || ||||| |||||| | |||||||| || || Sbjct 11088 CGTGCATGGATGGCTGCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTT 11147 Query 74378 TTGCCACGAGGCAACGCACTATAA 74401 ||||||| || ||||| || ||| Sbjct 11148 CTGCCACGTGGAAACGCCCTTTAA 11171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572852016987120