Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2216 165 1e-34 seq963 161 1e-33 seq1059 150 2e-30 seq2725 102 1e-15 seq1992 98.7 1e-14 seq227 95.1 1e-13 >seq2216 Length=6717 Score = 165 bits (182), Expect = 1e-34 Identities = 259/368 (70%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 1573867 ACGGCGACATGCCCAACCTCTTGCTG-GCGGGTCCGCCCGGCACGGGCAAGACCACGAGC 1573925 |||| | ||||| || | |||||| ||||| ||||| ||| ||||||||| |||| Sbjct 5828 ACGGAAATATGCCGAATATGTTGCTGAGCGGG-CCGCCGGGCGTGGGCAAGACAACGACT 5770 Query 1573926 ATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 1573985 ||||| ||||| | | | | |||| || | | |||||||| || || ||| Sbjct 5769 GTCGCGGCGCTGGCCAGAGAGATGCTCGGCGACGCGGTGAAGGAGGCCGTCCTGGAGCTC 5710 Query 1573986 AACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC 1574045 ||||| || || ||||||||| | || |||||||||| | ||||||| ||| Sbjct 5709 AACGCTTCCGATGAGCGCGGCATTGATGTCGTGCGCAGCACCATCAAGTCGTTTGCCCAG 5650 Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 || | | || |||||||||||| |||||| | | ||||| |||||||| |||| Sbjct 5649 AAAAAGGTCACGCTGCCGCCCGGAATGCACAAGATCGTGATCCTGGACGAGGCAGACTCG 5590 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165 | || ||| ||||||||||| || || |||||||| | |||| |||||| Sbjct 5589 ATGACAGAGGCCGCCCAGCAGGCACTCCGAAGGACCATGGAGGTGTTCACCGCCACGACC 5530 Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225 ||||| || || || |||||||| ||||| | | |||||||| || |||| |||||| Sbjct 5529 CGCTTCGCGCTTGCCTGCAACACCTCGTCAAAGATCATCGAGCCCATCCAGTCGCGCTGC 5470 Query 1574226 GCCATTCT 1574233 || || || Sbjct 5469 GCAATCCT 5462 >seq963 Length=27641 Score = 161 bits (178), Expect = 1e-33 Identities = 208/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || |||| || ||||| || | ||| || |||||||| |||||||| Sbjct 17267 ACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCAGGCATGAGCCCGCGCTT 17326 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||| ||||||||| ||| |||||||| || || ||||| |||||||| Sbjct 17327 CTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATTCCTTCGACTGCGGCAAA 17386 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || ||||| |||||| || || | || ||||||| ||| ||||| Sbjct 17387 CGCGACCAGACGCTCTGCAAAG-----GATGCGTGCGATG-AGATCCACGTCAAAGCCCA 17440 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 |||||||||||| |||| | || | | || || ||| | ||||| |||| |||||| Sbjct 17441 CTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAAGAGATGGTTCTTTTC 17500 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | ||||| || || ||||| || || | || || || ||| Sbjct 17501 CTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTACGTTTCC 17546 Score = 149 bits (164), Expect = 8e-30 Identities = 199/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || |||||||||||||| |||||| | | | || | | | Sbjct 17545 CCGAGTGGATGTTCTCCATCGCGATCTGGAAGCCATAAAAGCAGCGCGCTTCCGGGATCT 17604 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||| |||||| ||| || || || ||||| ||||| ||||| ||||||| Sbjct 17605 GGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCGA 17664 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || || |||||||| ||||| |||| || | | ||||||| ||| || | Sbjct 17665 AGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGAGCGATCGCCACTGCA 17724 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | ||| ||||| | |||||||||||||||| || |||||| ||| |||| Sbjct 17725 GCAAGTCCGAGCTCAGGTCGATTTCCTCGGCGGTCCAGAAGGACGCCTCGTGCTTCTTGT 17784 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAG 869907 |||| | ||| | | |||| | ||| ||||| || Sbjct 17785 ACATTTTCCAGATGTCGTGGTGCCTGATCGGGAAAAG 17821 Score = 145 bits (160), Expect = 9e-29 Identities = 229/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| ||| ||| |||||||||||||| || |||||||| ||| Sbjct 16953 GCCTTTTGGTACTCTCCCACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCGAGCGAAATC 17012 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||||||||| | | | ||| |||||| ||||| ||| | Sbjct 17013 AGCTCCATCCAGTCAAACGGGTTGCGGGCGTGGTAAACTTTTTCGTGCCCGAGGGACTGG 17072 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||||||||| || || || ||| || || |||||| ||||| Sbjct 17073 AGCAGGCGGTCGGCGACAAACTCAATATATTGCGCCATAAGTTCGCTGTTCATCCCGATC 17132 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGC-CTCGACGAT 868929 | | |||||||| || | | ||| || |||||| | | || || |||| ||| Sbjct 17133 AAGTCGCACGGCAGCGCGTCAATAATAAATTCCTTCTCGCACGCAACAGCGCTCG-TGAT 17191 Query 868930 GATCTGCCTGGGCAC---GTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 ||| | || |||| ||| || |||| | | ||| |||| | ||||| Sbjct 17192 GATGT---TGAGCACCGTTTCGTTCGGCAGCTTCTGCGGGCACATGCTGTACAAGAGGCA 17248 Query 868987 GGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||||||||| ||||| Sbjct 17249 CGCAAAGTCGCAGTGCAGACCCT 17271 >seq1059 Length=17963 Score = 150 bits (166), Expect = 2e-30 Identities = 272/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 1628200 GTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGC 1628259 || || |||||||||||||| | | |||| |||| ||||||| |||||||| || Sbjct 15935 GTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGT 15994 Query 1628260 GCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGAC 1628318 | ||||||||| ||||||| | | | || |||| | | |||||| || | || | Sbjct 15995 GTGCCGGTCTCAATCTGCGAGTCAAGCACCGCAAACCACAGTTTGCGCGCCGGAATCGTC 16054 Query 1628319 AGTC-CGCGCGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGT 1628377 || ||||||||||| | || ||| ||| || Sbjct 16055 --TCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCCC 16112 Query 1628378 AGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCA 1628437 | ||| ||| || ||||| ||| || || ||||| ||| | || | | Sbjct 16113 ACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCT 16172 Query 1628438 CCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGT 1628497 || | || ||| || ||||| ||||||||| ||||||||||| || ||||| || Sbjct 16173 CCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACGTG 16232 Query 1628498 TCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACG 1628557 ||| ||||||||||||||||| |||||||| | || | ||||||||||||||||| Sbjct 16233 ACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACG 16292 Query 1628558 GCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||| | |||||||||||| || || |||||||| || ||||| Sbjct 16293 GCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Score = 136 bits (150), Expect = 5e-26 Identities = 224/320 (70%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| || ||||| ||||| ||||| || | || || ||||| || || | |||||| Sbjct 16333 GCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTT 16392 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG--GCA 1630179 ||| ||| || |||||| | |||| || ||| || | ||| || | | Sbjct 16393 TGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGA---TGTTCGAAATGGA 16449 Query 1630180 AAG-CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGAT 1630238 || |||||||||||||| |||||||| || | |||||| | || ||||| || ||||| Sbjct 16450 GAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGAT 16509 Query 1630239 GCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGC 1630298 ||| ||||||||||| | |||||| || ||||||||||| | |||||| ||| Sbjct 16510 GCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCGCGG 16569 Query 1630299 CGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTC 1630358 ||||| || ||||| | || |||| || ||||| |||| |||||| || Sbjct 16570 CGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTC 16629 Query 1630359 GTAGGTGGCGAGCACGCGCG 1630378 ||| || |||| |||| || Sbjct 16630 GTACGTCTCGAGAACGCTCG 16649 Score = 105 bits (116), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 1627335 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGAC 1627394 ||| || |||| || ||||||| ||| |||||||||||||||||||| ||| Sbjct 15250 GTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTGTACGG 15309 Query 1627395 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 1627454 || | |||| |||| ||||| ||||||||||| | || || |||||| |||| || Sbjct 15310 TTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGCGCTAC 15369 Query 1627455 GAGGAGCGAGTTGCGCAGGCCGTGCT 1627480 | |||||||||||||| |||||||| Sbjct 15370 CAAGAGCGAGTTGCGCAAGCCGTGCT 15395 >seq2725 Length=19496 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 || ||| ||||||||||||| ||||| ||| ||||||||| | | |||| | Sbjct 11073 CCAGAGTCCCGCGGCTTTGTGGAGAACTCATACTTGCGCGGCCTGACGCCCACCGAGTTT 11132 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || ||||| || ||||| ||| | ||||| || ||||| || |||||| Sbjct 11133 TTCTTCCACGCAATGGGCGGCCGTGAGGGTCTCATTGACACTGCGGTCAAAACAGCCGAG 11192 Query 509156 ACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCGCGGC 509215 || |||||||||||||| || |||||| ||||||| |||| | | | || | Sbjct 11193 ACAGGCTACATCCAGCGACGCCTGATCAAGGCGATGGAAGACCTGATGGTGCGGTACGAC 11252 Query 509216 GGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 ||| ||||||||| | ||| ||| | | || ||| || |||| ||||| Sbjct 11253 GGCACGGTGCGCAACAGCGTCGGAGACGTGATTCAATTTTTGTACGGCGAGGACGG 11308 >seq1992 Length=21606 Score = 98.7 bits (108), Expect = 1e-14 Identities = 201/290 (69%), Gaps = 18/290 (6%) Strand=Plus/Minus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGC-GTGTGCTGCGCGCC 96712 || ||||| |||||||| ||||| || || || ||||| || || ||||| || | || Sbjct 6143 GCTGAGAATCTCATGATTGTCGATCTTGTCCGGAACGATTTGGGCCGTGTG-TGTGAGCT 6085 Query 96713 CGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCA 96772 || ||| ||||| | |||||| ||||||| || |||| | || || Sbjct 6084 CGCTTCCGTGCAAGTGCCTCAA------CTGATGCATATTGAGAGCTTCGCCACGGTACA 6031 Query 96773 CCAGATGGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGGACGGCGCT--CG---AC 96827 ||||||||||| |||| || ||| | | | | | || | ||||||||||| || | Sbjct 6030 CCAGATGGTGAGCACCATCTCCGGTCAG-TTGCCAGC-GTCGGACGGCGCTGCCGTGCGC 5973 Query 96828 CTCGTGCGCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCATG 96887 | | |||||||| ||||| ||| || ||||| ||||| |||||| ||||| | Sbjct 5972 TGCATTCGCGCGGCGTTTCCAATGGGTTCCATGACTGGCGCCCCCAAGCTGCGCACGCTC 5913 Query 96888 GAGATTCTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGG 96937 |||||| | ||| | | | ||||| ||||||||||||||||||| Sbjct 5912 GAGATTATTGAT-TCAT--TGGAGCACTCGGCGCGCGGGATCTACTCGGG 5866 >seq227 Length=16755 Score = 95.1 bits (104), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| ||||| ||| | ||| | || |||||||| || ||||||| || ||| Sbjct 4202 GCCAGCTCGCCAGGCAACAACAGCCTAACCGCGGTCTGAATTTCGCGCGACGTGAGCGTC 4261 Query 1254408 TTGCGCTTGTTCGAGTGCGC---CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 ||| |||| |||| | ||| | | || |||| | ||||| |||| | | Sbjct 4262 TTGGTCTTG---GAGTATGATGACAGCTTGGCTGCTTCGGCCGCAATGCGCTCGAAGAGG 4318 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 || |||||||||||||||||| |||||| | || || |||||| ||| ||||| Sbjct 4319 TCCGTGACAAACGAGTTCATGATCGACATGGCATTCGACGAAATGCCCGTGTCCGGGTGT 4378 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||| ||||||||||| ||| Sbjct 4379 ACCTGCTTCAGCACCTTGTAAATG 4402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106891857045438