Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1200 140 3e-28 seq970 122 8e-23 >seq1200 Length=24482 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || || | Sbjct 18895 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTGGAGTCCTCG 18836 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || ||||| Sbjct 18835 GACACGATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGATCAG 18776 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || ||||| ||||| ||||| | | | | || || || ||| Sbjct 18775 CAGCGCTTGATCTTCGCGGGGAAGCAGCTAGAGGACGGGCGCACGCTCTCGGACTACAAC 18716 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| ||||| || || || ||||||||| |||| ||||||||||||| Sbjct 18715 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTGCGCCTGCGCGGAGGCGG 18666 >seq970 Length=23808 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || ||| | || || || || | Sbjct 22732 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACAATCACGTTGGAGGTCGAGTCCTCG 22673 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || || || Sbjct 22672 GACACCATCGATAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCAGACCAG 22613 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || || ||||| ||||| || || ||||||||||| || |||| ||||||| ||||| Sbjct 22612 CAGCGCTTGATTTTTGCGGGCAAGCAGCTGGAGGA-CGGACGAACACTGTCAGACTATAA 22554 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| | |||||||| |||| ||||||| ||| Sbjct 22553 CATCCAGAAGGAGTCGACCTTGCACTTGGTTCTGCGTCTGCGCGGTGGC 22505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880650107920