Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq963 223 5e-52 seq2216 194 3e-43 seq1059 168 1e-35 seq227 143 4e-28 seq2725 100 5e-15 >seq963 Length=27641 Score = 223 bits (246), Expect = 5e-52 Identities = 247/328 (75%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || |||| || ||||| || ||| || |||||||| |||||||| Sbjct 17267 ACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCAGGCATGAGCCCGCGCTT 17326 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||| || |||||| ||| |||||||| || || ||||| |||||||| Sbjct 17327 CTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATTCCTTCGACTGCGGCAAA 17386 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||| || ||||| ||||| | | || | || ||||||| ||| ||||| Sbjct 17387 CGCGACCAGACGCTCTGCAAAGG-----ATGCGTGCGATGA-GATCCACGTCAAAGCCCA 17440 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||||||| |||| |||| | | || || ||| | ||||| |||| ||| || Sbjct 17441 CTCGGCCTTTTTCTTCACGCAGGGAATCTCTTCCATAGCGTGGAAGAGATGGTTCTTTTC 17500 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | ||||| ||||| ||||| ||||| | ||||| || || ||||||||||| || Sbjct 17501 CTCTGGGTCGGACACGTACGTGTCAATGAGCAAGGAGTACGTTTCCGAGTGGATGTTCTC 17560 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 || |||||||||||||||||||||||| Sbjct 17561 CATCGCGATCTGGAAGCCATAAAAGCAG 17588 Score = 140 bits (154), Expect = 5e-27 Identities = 225/315 (71%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| ||||| ||| ||| |||||||||||||| || |||||||| |||| ||||||| Sbjct 16962 TACTCTCCCACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCGAGCGAAATCAGCTCCATC 17021 Query 793968 CACGGGAACGGGTT--GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 || |||||||| || ||| |||| || ||| |||||| ||| ||||||| Sbjct 17022 CAGTCAAACGGGTTGCGGGCGT--GGTAAACTTTTTCGTGCCCGAGGGACTGGAGCAGGC 17079 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGAT-GAGCGCC 794084 |||||||||| || ||||| || || ||| || || |||||| ||||| || | Sbjct 17080 GGTCGGCGACAAACTCAATATATTGCGCCATAAGTTCGCTGTTCATCCCGATCAAGTCGC 17139 Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC-CTCGATGATGATCTG 794143 || ||||||| || | | ||| || |||||| | | || || |||| ||||||| | Sbjct 17140 AC-GGCAGCGCGTCAATAATAAATTCCTTCTCGCACGCAACAGCGCTCG-TGATGATGT- 17196 Query 794144 CCTGGGCAC---GTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAA 794200 || |||| ||| || | |||| | | ||| |||| | ||||| ||||| Sbjct 17197 --TGAGCACCGTTTCGTTCGGCAGCTTCTGCGGGCACATGCTGTACAAGAGGCACGCAAA 17254 Query 794201 GTCGCAATGCAGACC 794215 |||||| |||||||| Sbjct 17255 GTCGCAGTGCAGACC 17269 Score = 127 bits (140), Expect = 3e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 796162 TGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCG 796221 ||||| |||||| |||||| || || ||||| ||||| ||||| |||||| Sbjct 17604 TGGACGTCCTTCGAGAAGCGCTCGCACAAATTCTCCAGAACGATTCCGTCCGATGCGGCG 17663 Query 796222 AAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGG 796281 || |||||||| || |||||||| ||||| |||| || | | ||||||| ||| || Sbjct 17664 AAGAAGGCGAGCACATGCTTGATGAAGTGCTGCTCATCCTTGTTGAGCGATCGCCACTGC 17723 Query 796282 ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTG 796341 | | ||| | || ||||||| |||||||||||||| ||||| |||||| ||| ||| Sbjct 17724 AGCAAGTCCGAGCTCAGGTCGATTTCCTCGGCGGTCCAGAAGGACGCCTCGTGCTTCTTG 17783 Query 796342 TACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAG 796379 ||||| | ||| || |||| | ||| ||||| || Sbjct 17784 TACATTTTCCAGATGTCGTGGTGCCTGATCGGGAAAAG 17821 >seq2216 Length=6717 Score = 194 bits (214), Expect = 3e-43 Identities = 323/459 (70%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 |||||| | ||||||||||| ||| | ||| || || | ||||| ||||||| ||| Sbjct 5916 CCGTGGGTGGAAAAGTACCGGCCGGTAAAGCTGGAGGATGTGGTGGGGAACGAGC-CGCT 5858 Query 2018976 GTTGC-CTACCTCAAGGCGCTGGC---CGCCG-ACGGCAACATGCCCAACCTCTTGCTG- 2019029 | || | ||| ||||| | ||| | |||| || ||||| || | |||||| Sbjct 5857 GGTGGGCCGCCT----GCGCTTGATTGCGCAGCACGGAAATATGCCGAATATGTTGCTGA 5802 Query 2019030 GCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTG 2019089 ||||||| ||| ||| ||||||||| |||| ||||| ||||| | | | | | Sbjct 5801 GCGGGCC-GCCGGGCGTGGGCAAGACAACGACTGTCGCGGCGCTGGCCAGAGAGATGCTC 5743 Query 2019090 GGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGAC 2019149 |||| || | | |||||||| || || ||||| || || || ||||||||| | || Sbjct 5742 GGCGACGCGGTGAAGGAGGCCGTCCTGGAGCTCAACGCTTCCGATGAGCGCGGCATTGAT 5683 Query 2019150 GTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGC 2019209 |||||||| || | ||||||| || ||||| || ||||||||||| Sbjct 5682 GTCGTGCGCAGCACCATCAAGTCGTTTGCCCAGAAAAAGGTCACGCTGCCGCCCGGAATG 5623 Query 2019210 CACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTC 2019269 |||||| | | ||||| || ||||| |||| | || ||| ||||||||||| ||| Sbjct 5622 CACAAGATCGTGATCCTGGACGAGGCAGACTCGATGACAGAGGCCGCCCAGCAGGCACTC 5563 Query 2019270 CGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329 ||| ||||||||| || |||| |||||| || || ||||| ||||||||||| ||| Sbjct 5562 CGAAGGACCATGGAGGTGTTCACCGCCACGACCCGCTTCGCGCTTGCCTGCAACACCTCG 5503 Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368 || | | ||||||| || ||||| || ||||| ||| Sbjct 5502 TCAAAGATCATCGAGCCCATCCAGTCGCGCTGCGCAATC 5464 >seq1059 Length=17963 Score = 168 bits (186), Expect = 1e-35 Identities = 279/405 (69%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 ||||| |||||||||||||| | |||| |||| ||||||| ||||||||| || Sbjct 15935 GTGCCGAGGTTCTGCTGGTTCGACTTTGAGTTGGCGGCATCCTTGTACAGCATGTACGGT 15994 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACG-ATGGCCGACCAAATTTGGCGCGCGGGCACCGA 2071730 | || ||||| ||||||| || | | | || |||| | || |||||| || | || Sbjct 15995 GTGCCGGTCTCAATCTGCGA-GTCAAGCACCGCAAACCACAGTTTGCGCGCCGGAATCGT 16053 Query 2071731 GGTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTG 2071790 | ||||||||| | | || || || ||| | | || Sbjct 16054 CTCGCGCGCGCGGCCTTCGTTTTCGTACTTGGTGTACAGCGCCTCGAAGTCCGGACCC-- 16111 Query 2071791 GCAC---TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGT 2071847 ||| ||| ||| || ||||| ||| ||||| ||||| ||| | ||| | Sbjct 16112 -CACGTGTCGCACAGTCCCGGCGCTTCGTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTC 16170 Query 2071848 CACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCG 2071907 | |||| || ||| |||||||| ||||||||| ||||||||||||| ||||| || Sbjct 16171 CTCCACTCGCTTCATGAACAGGTCCGGCGTCCACAGCGCGTAAAAGAGATCACGCGCACG 16230 Query 2071908 GTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCA 2071967 ||| ||||||||||||||||| ||||||||| | || | | |||||||||||| Sbjct 16231 TGACTCTTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCA 16290 Query 2071968 CGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| | |||||||||||| || || |||||||| || ||||| Sbjct 16291 CGGCTCAATGTAGCAGGCAAACGCACCTTTGCGCTTACCACCGCC 16335 Score = 141 bits (156), Expect = 1e-27 Identities = 225/320 (70%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||| || || || ||||| ||||| || | || || ||||| || |||| |||||| Sbjct 16333 GCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCATTGGTACAATGCCGTT 16392 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG--GCA 2073654 ||| ||| || |||||| | |||| | ||| || | ||| || | | Sbjct 16393 TGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGA---TGTTCGAAATGGA 16449 Query 2073655 AAG-CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGAT 2073713 || |||||||||||||| | |||||| || | |||||| |||||||| || ||||| Sbjct 16450 GAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAGCGCTTCAGCGTATCATAGAT 16509 Query 2073714 GCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGC 2073773 ||| ||||||||||| | |||||| || |||||||||||| | |||||||||| Sbjct 16510 GCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTGAGCTGCGGGCGCGG 16569 Query 2073774 CGTGCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTC 2073833 ||||| |||||||| | || |||| || |||| | ||| ||| |||| || Sbjct 16570 CGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTTTGCGACAACATTTC 16629 Query 2073834 GTAGGTGGCGAGCACGCGCG 2073853 ||| || |||| |||| || Sbjct 16630 GTACGTCTCGAGAACGCTCG 16649 Score = 102 bits (112), Expect = 1e-15 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2069604 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGAC 2069663 ||| || |||| || ||||||| ||| |||||||||||||||||||| |||| Sbjct 15250 GTTAACAACGGCGAACTCGCCCGCGAGAACGCGGCGCGTGTAGATGTTTGACGTGTACGG 15309 Query 2069664 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 2069723 || | |||| |||| ||||| ||||||||||| | || || |||||| |||| || Sbjct 15310 TTCAAAGCACTCGTTGTTACCCAGAATCTGCGACGTGGAAGCAGTCGGCATGGGCGCTAC 15369 Query 2069724 GAGCAGCGAGTTGCGCAGGCCGTACT 2069749 | ||||||||||||| ||||| || Sbjct 15370 CAAGAGCGAGTTGCGCAAGCCGTGCT 15395 >seq227 Length=16755 Score = 143 bits (158), Expect = 4e-28 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || || |||||| | ||||| ||||| ||| Sbjct 4159 GTACTTGGTCACTGCCTTGGTACCCTCCGACACCGCGTGCTTCGCCAGCTCGCCAGGCAA 4218 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 | ||| | || |||||||| || ||||| | || ||| ||| |||| ||| | Sbjct 4219 CAACAGCCTAACCGCGGTCTGAATTTCGCGCGACGTGAGCGTCTTGGTCTTGG-AGTATG 4277 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| | | || |||| | ||||| |||| | ||| ||||||||||||||| Sbjct 4278 ATGACAGCTTGGCTGCTTCGGCCGCAATGCGCTCGAAGAGGTCCGTGACAAACGAGTTCA 4337 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| | || || |||||| ||| ||||| |||||||| |||||||||| Sbjct 4338 TGATCGACATGGCATTCGACGAAATGCCCGTGTCCGGGTGTACCTGCTTCAGCACCTTGT 4397 Query 1485710 AAA 1485712 ||| Sbjct 4398 AAA 4400 >seq2725 Length=19496 Score = 100 bits (110), Expect = 5e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 || ||| ||||||||||||| ||||| ||| ||||||||| | | |||| | Sbjct 11073 CCAGAGTCCCGCGGCTTTGTGGAGAACTCATACTTGCGCGGCCTGACGCCCACCGAGTTT 11132 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| || ||||||||| | ||||| || ||||| || |||||| Sbjct 11133 TTCTTCCACGCAATGGGCGGCCGTGAGGGTCTCATTGACACTGCGGTCAAAACAGCCGAG 11192 Query 431142 ACGGGCTACATCCAGCGTCGGTGCATCAAATCGATGGA 431179 || |||||||||||||| || ||||| ||||||| Sbjct 11193 ACAGGCTACATCCAGCGACGCCTGATCAAGGCGATGGA 11230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915925787073146