Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq250 664 0.0 seq316 493 1e-134 >seq250 Length=47047 Score = 664 bits (736), Expect = 0.0 Identities = 762/1019 (75%), Gaps = 4/1019 (0%) Strand=Plus/Plus Query 157042 TGGGAATCATTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTC 157101 |||||| |||||| ||||| || ||| | |||||||| ||| | |||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 157102 GGTGTGCTTATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGT 157160 ||||| | |||||||| ||||| | |||| ||| |||| ||||| |||||||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 157161 AGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTA 157220 || || ||||| |||||||| || ||||| || |||||||||||||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 157221 TGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTT 157280 || |||||||| ||||||||||| ||| |||| ||| || || ||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 157281 CTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCA 157340 |||||| || |||||||| || || | || |||||| | ||||||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 157341 ACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 157400 || | || || ||||| | | || | | ||| ||||| |||||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCTTGCTACATGGGTCGTGAGTGGGAACT 1589 Query 157401 TTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGC 157460 | ||||||||||||||||| || |||||| |||||| | ||| || ||||| || || Sbjct 1590 TAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCAGC 1649 Query 157461 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCC 157520 ||| | ||| |||||| | |||| || | |||||||| ||||| |||| |||||| Sbjct 1650 TGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATGCC 1709 Query 157521 TCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCT 157580 | | ||||| |||||||| || |||| ||| | || ||||| || ||||| || ||||| Sbjct 1710 TTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATTCT 1769 Query 157581 TATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGC 157640 ||||| || |||||| | || |||||||| ||||| ||||||||| | ||| ||| Sbjct 1770 AATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGTGC 1829 Query 157641 TATGCACGGAAGTCTCGTTACTTCCTCGCTT-GTTCGTGAAACAACTGAAACAGAGTCAC 157699 ||||||||| || || |||| || | || | |||||||||||||||| || || Sbjct 1830 TATGCACGGTTCACTAGTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAATGAATCTG 1888 Query 157700 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACG 157759 |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| | Sbjct 1889 CTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACATG 1948 Query 157760 GTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACT 157819 ||||||| ||||| | || |||||||| ||| ||||||||| | ||||||| Sbjct 1949 GTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCACT 2008 Query 157820 TCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 157879 ||||| | | |||||| ||||| || || ||||| || | | ||| || | Sbjct 2009 TCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACTA 2068 Query 157880 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTG 157939 |||| || ||| | || ||||||||||||||||| || | |||| | || ||||||| Sbjct 2069 TGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGTG 2128 Query 157940 TGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATG 157999 | | ||||| ||||| ||| || | ||||| ||| | ||||||||||||||||||| Sbjct 2129 TAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCATG 2188 Query 158000 AGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCAGAATCAACACCTGTTGCA 158058 |||||||||| |||||||||||| | || | || ||| ||||| |||||||||| Sbjct 2189 AGCGTAACGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGCA 2247 >seq316 Length=14323 Score = 493 bits (546), Expect = 1e-134 Identities = 728/1022 (71%), Gaps = 12/1022 (1%) Strand=Plus/Plus Query 158769 GGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGG 158828 ||||||||||| | | || |||||| | || | || ||||| ||||| | || ||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 158829 TCTGGACTTCTTCTTCTACCCACTGCT--TATCTTGCTATTGGCGGTTGGCTTACTGGCA 158886 ||||| | | || || || |||| |||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 158887 CGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAA 158946 | ||||| | || |||||||| ||||| | || | ||| || | || ||| | Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 158947 ACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTC 159006 |||| | ||||| |||||||| ||||||||| || |||||| || ||| || | ||| Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 159007 -TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGG 159065 | ||||| || || |||||||| |||||| || ||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 159066 AATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCAGTTTGA 159124 | |||| | || | || || || |||| ||||| ||||| || || || |||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGGTTT-TTGTTTACGTCAGTTTGA 10504 Query 159125 ACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159184 | ||| | || | ||| | | || || || |||||||| || || || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 159185 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC 159244 ||| || || || || | || || || | || || | ||||||||||| ||||| Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 159245 GTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTG 159304 ||||| || || || || || || || || | ||| |||| || || || || || Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 159305 GACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATC 159364 ||| |||| || |||||||||||||| || |||||||| || ||||| || | ||| Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 159365 TGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACAC 159424 |||||| ||||| | || ||||||||||| |||| || ||||| || || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 159425 CTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCG 159484 |||| || ||| | |||||||| || || || ||||| ||||| || |||||||| Sbjct 10805 ATTTAGAGCTTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACCG 10864 Query 159485 CTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTAT 159544 || ||||| || || || || |||| ||||||||||| | ||||| ||||||||||| Sbjct 10865 TTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTAT 10924 Query 159545 GTTGTTTGTGCCTGTTATGGGTCTATGGACA--TCCAGTATTGGCATTATTGGTCTTGCT 159602 ||||||||| || |||| ||| | |||||| | || ||||||||| | || | || Sbjct 10925 GTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCA--ATTGGCATTGTAGGATTAGCA 10982 Query 159603 CTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAA 159662 | ||| | | ||||| || || || ||| || | ||||| ||||| ||||| ||| Sbjct 10983 TTAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAA 11042 Query 159663 TTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCA 159722 |||||||| ||||| || || || ||||| |||| ||||| | ||||| ||| |||| Sbjct 11043 TTTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCT 11102 Query 159723 CCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAAC 159782 | ||||| || ||||||||||| || |||||||| || ||||| ||| | || ||| Sbjct 11103 GCACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 11162 Query 159783 GC 159784 || Sbjct 11163 GC 11164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545253056817120