Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq250 632 2e-176 seq316 480 1e-130 seq181 129 7e-25 >seq250 Length=47047 Score = 632 bits (700), Expect = 2e-176 Identities = 768/1039 (74%), Gaps = 7/1039 (1%) Strand=Plus/Plus Query 177549 TGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 177608 |||||| |||||| ||||| || || | ||||| | ||| |||||||||| Sbjct 1231 TGGGAACGTTTCTGCTCTTGGGTTACAAGCACTGAAAACCGTTTATATATCGGTTGGTTT 1290 Query 177609 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGT 177667 || ||| | |||||||| || | || |||| ||| |||| |||||| | || ||||| Sbjct 1291 GGTGTATTAATGATTCCTACATTATTAACAGCTACT-TCTGTATTCATCATTGCATTCGT 1349 Query 177668 CGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 177727 |||||||| || || || || || || ||||||||||| || |||||||| | | || Sbjct 1350 TGCTGCTCCTCCAGTTGATATTGATGGTATCCGTGAACCAGTTGCTGGTTCTTTACTATA 1409 Query 177728 TGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTT 177787 ||||||||||| ||||||||||| ||| | ||| ||| || |||||| ||||||| Sbjct 1410 CGGTAACAACATTATCTCTGGTGCTGTTATTCCAAGTTCTGCTGCTATTGGTATTCACTT 1469 Query 177788 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 177847 ||| || || |||||||| || || | || |||||| | || |||||||| | || Sbjct 1470 CTACCCAATTTGGGAAGCTGCTTCTTTAGACGAGTGGTTATACAACGGTGGGTGCTACCC 1529 Query 177848 ACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAGTGGGAA 177905 || | || || ||||| | | || | || ||| || ||||| |||||||||||| Sbjct 1530 TCTAATCGTATTACACTTTTTACTAGGTGTTGCT-TGC-TACATGGGTCGTGAGTGGGAA 1587 Query 177906 CTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCA 177965 ||| |||||| |||||||||| || |||||| |||||||| |||||| || |||||| Sbjct 1588 CTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATTCTCTGCTCCAGTTGCA 1647 Query 177966 GCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATG 178025 || ||| | || || || | |||| || | |||||||| ||||| |||| |||| Sbjct 1648 GCTGCAACTGCTGTATTCTTGATCTACCCGATTGGTCAAGGCAGCTTCTCTGATGGTATG 1707 Query 178026 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATC 178085 ||| | ||||| |||||||| || |||| |||| ||||||||||||| || || || || Sbjct 1708 CCTTTAGGTATTTCTGGTACATTCAACTTCATGATTGTATTCCAAGCTGAGCATAACATT 1767 Query 178086 CTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCT 178145 || |||||||| |||||| | ||||||||||| ||||| ||||||||||| ||| | Sbjct 1768 CTAATGCACCCATTCCACCAATTAGGTGTTGCTGGTGTATTTGGTGGATCTCTATTCAGT 1827 Query 178146 GCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCC 178205 |||||||| || || || |||||| | ||||||| || || |||| ||| || Sbjct 1828 GCTATGCACGGTTCACTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAATGAATCT 1887 Query 178206 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCAT 178265 |||||||||||||||||||| |||||||||||||| |||||||| || || || ||| Sbjct 1888 GCTAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACTTATAACATTGTTGCTGCACAT 1947 Query 178266 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCAC 178325 |||||||| |||||||| || ||||||||||| ||||||||||| |||||||| ||| Sbjct 1948 GGTTACTTTGGTCGTTTAATATTCCAATATGCTAGTTTCAACAACTCTCGTTCACTTCAC 2007 Query 178326 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACC 178385 |||||| | | |||||| || || || || ||||| || | | |||||| || Sbjct 2008 TTCTTCTTAGGTTTATGGCCAGTTGTAGGTATTTGGTTAACATCTATCTCTGTATCAACT 2067 Query 178386 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178445 ||||| |||||| | ||||| |||||||||||||| || | | ||| | ||||| ||| Sbjct 2068 ATGGCGTTTAACTTAAATGGTTTCAACTTCAACCAATCTGTAGTTGACAGCCAAGGTCGT 2127 Query 178446 GTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 178505 || | ||||| ||||| || | | |||||||| | || |||||||| ||||| Sbjct 2128 GTAATTAACACTTGGGCTGATATCATTAACCGTGCTAACTTAGGTATGGAAGTTATGCAT 2187 Query 178506 GAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGAGTCCACACCTGTGGC 178565 || | || || || |||||||| | || | || | | ||| || |||||| || Sbjct 2188 GAGCGTAA-CGCTCACAACTTCCCATTAGACTTAGCGTCTGGTGAATCTCTACCTGTTGC 2246 Query 178566 CTTGATTGCTCCATCTGTT 178584 || | |||||| ||||| Sbjct 2247 ATTAACAGCTCCAGCTGTT 2265 >seq316 Length=14323 Score = 480 bits (532), Expect = 1e-130 Identities = 727/1024 (71%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 178933 GGCTGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGG 178992 || ||||| ||| | | ||||||||| | || | || || ||||| || | |||||| Sbjct 10149 GGATGGTTTGATCTTATAGATGACTGGTTGAAGAGAGACCGTTTTGTTTTCATAGGTTGG 10208 Query 178993 TCTGGACTCCTACTTCTTCCCACTGCT--TATCTTGCCATTGGCGGTTGGCTTACTGGGA 179050 ||||| | | || || || |||| ||||||||| | || || |||||||| || | Sbjct 10209 TCTGGTTTATTGCTACTGCC--TTGCTCATATCTTGCCTTAGGTGGATGGCTTACAGGAA 10266 Query 179051 CAGCTTTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTA 179110 | ||||||| || |||||| || |||||| | || ||||| || | |||||| || Sbjct 10267 CTACTTTTGTAACATCTTGGTATACTCATGGTTTAGCAAGTTCATACTTAGAAGGTTGTA 10326 Query 179111 ACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 179170 |||| | || || || || || || || ||| || |||||| || ||| || || | | Sbjct 10327 ACTTCTTAACAGCTGCAGTTTCAACTCCAGCTAATAGTATGGGACACTCT-TTATTATTC 10385 Query 179171 TT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGG 179229 || ||||| || || |||| || ||||| | ||||| || | || || || ||| Sbjct 10386 TTGTGGGGACCAGAAGCTCAAGGCGATTTCACAAGATGGTGTCAGATAGGTGGTCTTTGG 10445 Query 179230 AATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTT-CGTCAGTTTGA 179288 | ||| | ||| | || || || || | ||||| || || || || ||||||||||| Sbjct 10446 ACTTTTATAGCTTTACATGGCGCTTTTGGACTAATAGG-TTTTTGTTTACGTCAGTTTGA 10504 Query 179289 ACTGGCACGTCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGC 179348 | ||| | || | ||| | | ||||| || || ||||||||| | || ||||| | Sbjct 10505 GATTGCAAGACTTGTGGGTTTGAGACCTTATAACGCTATTGCTTTTTCAGGACCTATATC 10564 Query 179349 CGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCC 179408 || ||||| |||||| | || || || | || ||| | |||||||| ||||| || Sbjct 10565 TGTGTTCGTATCAGTATTTTTAATGTATCCTTTAGGCCAAGCTAGTTGGTTTTTTGCTCC 10624 Query 179409 ATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTG 179468 ||||||||||| || ||||||||||| || | |||||||| ||||| || ||||| Sbjct 10625 TAGTTTTGGTGTTGCTGCCATCTTTAGATTTTTATTATTCTTACAGGGTTTTCATAACTG 10684 Query 179469 GACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTC 179528 ||| | || || || || |||||||| || || ||||| || |||||||| | | | Sbjct 10685 GACGTTAAATCCATTCCATATGATGGGTGTAGCTGGTATTCTTGGTGGTGCCTTATTATG 10744 Query 179529 TGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACAC 179588 |||||| ||||| | ||||| || ||||| || | ||||||||| || || |||| Sbjct 10745 TGCTATCCATGGTGCTACTGTTGAAAATACCTTATTTGAAGATGGTGACGCTGCGGACAC 10804 Query 179589 ATTTAAAGCGTTCGACT-CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACC 179647 ||||| ||| || ||| | || ||| || || || ||||| ||||| ||||| |||| Sbjct 10805 ATTTAGAGC-TTTTACTCCAACTCAATCTGAAGAAACATATTCAATGGTAACAGCAAACC 10863 Query 179648 GTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTA 179707 |||||||||| || || || || ||| | ||| || || | ||| | || ||||||| Sbjct 10864 GTTTTTGGTCACAAATTTTTGGTGTTGCTTTTTCTAACAAAAGATGGCTACATTTCTTTA 10923 Query 179708 AGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTC 179767 | ||||||| || || | ||| | ||| ||| |||||||| | || |||| Sbjct 10924 TGTTGTTTGTACCAGTTACTGGTTTGTGGACAAGTTCAATTGGCATTGTAGGATTAGCAT 10983 Query 179768 TTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGT 179827 | ||| | | |||||||| ||||| ||| || | ||||| ||||| |||||||| | Sbjct 10984 TAAATTTAAGAGCTTATGACTTTGTATCTCAGGAACTTAGAGCCGCAGAGGATCCTGAAT 11043 Query 179828 TCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCAC 179887 | || || |||||||| || || ||||| |||| ||||| | ||||| ||| |||| Sbjct 11044 TTGAAACATTCTATACTAAAAATATTCTATTGAACGAAGGTATTCGTGCATGGATGGCTG 11103 Query 179888 CTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACG 179947 | ||||| || ||||||||||| || |||||||| || || || || |||| |||| Sbjct 11104 CACAAGATCAGCCTCATGAAAACTTTATATTCCCAGAGGAGGTTCTGCCACGTGGAAACG 11163 Query 179948 CACT 179951 | || Sbjct 11164 CCCT 11167 >seq181 Length=69431 Score = 129 bits (142), Expect = 7e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 138518 TTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTC 138577 |||| ||||| ||||| ||||| | || ||||| || || ||| ||||||||| Sbjct 20288 TTGATTGTGCAGATGACGTATACATTTTAGACGCTGCAGAAGAGCAAGGGGTTGATCTTC 20347 Query 138578 CCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTG 138637 | || || || | |||||||| || ||||| || ||||||||| || ||||| || Sbjct 20348 CGTATTCTTGCAGAGCTGGTGCGTGCTCTACTTGCGCTGGTAAAGTATCAGAAGGTACGA 20407 Query 138638 TAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGA 138697 | ||||| |||||||| || || | ||||| || |||| || || |||||| | | | Sbjct 20408 TTGATCAATCTGACCAATCATTTTTAGATGACGATCAAACTGGTGCTGGATTTGTTTTAA 20467 Query 138698 CTTGCGTAGCATACCCCACATCCGATTGTATAAT 138731 |||||||||| || || ||||| ||||| | ||| Sbjct 20468 CTTGCGTAGCTTATCCTACATCAGATTGCACAAT 20501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605644381488240