Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq189 179 3e-39 >seq189 Length=13781 Score = 179 bits (198), Expect = 3e-39 Identities = 271/386 (70%), Gaps = 12/386 (3%) Strand=Plus/Minus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 ||||||| | ||| | ||| ||||| ||||||||||| || || | ||| |||| ||| Sbjct 12523 TACCATTAGAATCTATATCGAATGTAACTTCAATTTGCGGCACACTTCTTGGAGCTGGTA 12464 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 || || || || |||||||||| || | ||||||||||||| |||| || ||| | Sbjct 12463 AAATTCCATCTAACCTAAATGTTCCTAGGCTTTTATTATCTTTAGCAAATTCTCTTTCTC 12404 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 | | | | || || ||| | |||||||||| |||| ||||||| | Sbjct 12403 CTTGAAGCACATGAATTTCAACATTTGGTTGATTATCTACTGCTGTTGAAAATACTTCTG 12344 Query 281622 ATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTG 281681 |||||||| ||||| ||||| |||||| |||||| || ||||| | ||||| || Sbjct 12343 ATTTTTTAGTTGGAATAGTTGTATTTCTAGTAATAATCTTTGTCATTACTCCACCTAATG 12284 Query 281682 TTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCAT 281741 |||| | ||| | ||| | |||||| |||| |||| | ||||| | || | Sbjct 12283 TTTCAACACCTAAAGATAAAGGAGTTACAT---CTAG---------TAGAAGTATATCTT 12236 Query 281742 CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAG 281801 | || |||| | || | | ||||||||| ||| |||||| |||||| ||||||||| Sbjct 12235 TAACTTCACCAGCTAGTACACCTGCTTGAACAGCTGCACCAATCGCAACAACTTCATCAG 12176 Query 281802 GATTAACAGTTTCATTTAGTTTTTTA 281827 ||||||| ||| ||| ||| |||| Sbjct 12175 GATTAACGCTTTGATTAGGTTCTTTA 12150 Score = 118 bits (130), Expect = 8e-21 Identities = 196/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||| || || ||||| | |||| |||||| |||| | || | ||| | ||| Sbjct 11774 TCAAAATCATCTCCACCCAAGTGGGTATCTCCTGATGTAGATAAAACCTCGAATACGCCA 11715 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 ||| ||| || | | || ||| ||||| ||||| | |||||||| ||||| Sbjct 11714 TCTCCAACTTCTAATAATGATACGTCAAATGTTCCTCCACCTAAATCAAAAACAAGTA-- 11657 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 | |||| || | || |||||||||| ||||| || | | |||||| || || ||| Sbjct 11656 -TTGTTTCATTATTTT---TTTTATCAAGTCCATATGCTAGTGAAGCAGCTGTAGGCTCA 11601 Query 282374 TTAATAATTCTCAAAACAT-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || | || | | |||| |||| ||||| || | || |||| ||||| | ||| || Sbjct 11600 TTGACTATGCGAAGTACATCTAAG-CCAGCTATCTTGCCGGCATTCTTAGTAGATTGCCT 11542 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| |||||||||||||| || ||||| || || || || Sbjct 11541 TTGAGAATCGTTAAAATAGGCTGGAACTGTTATCACTGC 11503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740482425337164