Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Porphyridium_20purpureum_20[genbank_20GCA_5F000397085.1_202013-05- 16] 3,014 sequences; 19,451,899 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1059 255 6e-63 seq963 168 6e-37 seq2751 116 4e-21 seq970 114 1e-20 >seq1059 Length=17963 Score = 255 bits (282), Expect = 6e-63 Identities = 642/958 (67%), Gaps = 27/958 (3%) Strand=Plus/Plus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 |||| || || || || | |||||||||||| ||| || || || ||||||| | | Sbjct 15845 TTCAGCGCAATGGACGCCAAGTTGCACACGGCCACCTCGTCAGGTGCTGTGTACTCAATG 15904 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || || | ||||| |||||||| ||| ||| | ||||| || || ||| | Sbjct 15905 ATTTCTGTGCACAAATTGCTGCTGCGGATTGTGCCGAGGTTCTGCTGGTTCGACTTTGAG 15964 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC---CACT 148991 ||| || ||||||||||||||||||||| ||| || || | ||||| || ||| Sbjct 15965 TTGGCGGCATCCTTGTACAGCATGTACGGTGTGCCGGTCTCAATCTGCGAGTCAAGCACC 16024 Query 148992 ATGAACCGATGCAGGTCCTGCGCGC-GCACTTG-CT-GCTCGTAGCGACCCTCCTGCTCG 149048 |||| ||| | ||||||| | | | | || || || ||| || || | ||| Sbjct 16025 GCAAACCA---CAGTT--TGCGCGCCGGAATCGTCTCGCGCGC-GCGGCCTTCGTTTTCG 16078 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT- 149107 || || |||||| |||||| || || | ||| || || || | ||| Sbjct 16079 TACTTGGTGTACAGCGCCTCGAAGTCCGGACCCCACGTGTCGCACAGTCCCGG-CGCTTC 16137 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || ||||| | ||| |||| |||||| | | ||| |||||||| ||||| || || Sbjct 16138 GTTGGGGCAGAAGAGGCTCCACTGTCCGTCCTCCTCCACTCGCTTCATGAACAGGTCCGG 16197 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226 | ||| |||||||| | ||| || ||||| | || | ||||| ||| ||| || Sbjct 16198 CGTCCACAGCGCGTAAAAGAGATCACGCGCACGTG-ACTCTTCCTTGCCGTGGTTCTTGC 16256 Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286 |||||| ||| | || ||||| |||||||||||||||||||| || | ||| | Sbjct 16257 GCAGGTCGAGGAACTCAAAAATGTCGGCGTGCCACGGCTCAATGTAGCAGGCAAACGCAC 16316 Query 149287 CCTTGCGCTTGCC---GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343 | |||||||| || |||||| || |||| ||| | ||| || ||||||| | || Sbjct 16317 CTTTGCGCTTACCACCGCCCTGATCCACGTAACGCGCTGTGTCATTGTACACTCGCAGCA 16376 Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCA 149403 | ||| ||||||| | | | ||| || || | |||| || | || || | Sbjct 16377 TTGGTACAATGCCGTTTGACGAGCCATTTGTGCCCCGAATGTAGCTCTTGGTGGCACGGA 16436 Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGC-CG 149462 || | | || |||||||||||| | |||| || || |||||||| ||| Sbjct 16437 TGTTCGAAATGGAGAGACCGATGCCGCCGGCTGACTTGGAAATCACCGCGCAG-CGCTTC 16495 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 ||||| |||||||| ||||| ||| ||||||||||||||||||||||||| Sbjct 16496 AGCGTATCATAGATGCCTTCGATCGAGTCTTCTTTCATGGTCAGCAGAAAGCACGAGCTG 16555 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| |||||| || ||||| || || ||| || || || | || Sbjct 16556 AGCTGCGGGCGCGGCGTGCTTGCATTGAACAAAGTCGGCGAGGCATGCGTGAAGAACTTT 16615 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 || || ||| ||||||| |||||| |||| ||||| | |||||||||| Sbjct 16616 TGCGACAACATTTCGTACGTCTCGAGAACGCTCGGGATGTCGTGCATGTGGATGCCTACT 16675 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAA- 149701 || |||||||||||||| ||||||||||||||| |||| | ||| | || |||| Sbjct 16676 GCCACGCGCATCAGCATGTGCTGCGGTCGCTCCACCAC---CTGTCCGTTCATGCGCAAA 16732 Query 149702 --GTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 ||| ||| || |||||| | |||||||| | |||| || |||||| ||| Sbjct 16733 AGGTACGAACGTTCGAGCGTCTTGAACCCAAAGTAGTCGTAGCAGAAATCGCGGTCGT 16790 Score = 120 bits (132), Expect = 3e-22 Identities = 369/558 (66%), Gaps = 21/558 (4%) Strand=Plus/Plus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997 ||||||||| | ||||||| || ||||| || ||||||||||||| |||| |||| Sbjct 14929 GGCAGCGGGACGGGTGCGCAAGTAATACATACCGGTCTTGAGGCCCAGTTTCCATCCGTA 14988 Query 147998 GTCGTGCACCGACGACATGAGCGTG--TACGTCGGGTGCGGC-ACAAACAGATTAAACGA 148054 ||||| || |||| || || | ||| ||| || || | | || ||| || Sbjct 14989 AAAGTGCATGGAGGACA---GCTTGCCTGCGTTGGGGGCAGCCATATGCACATTCAAGCT 15045 Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCAT-TTCAATGAGTCGCTTTATCT 148113 | ||| ||||| ||||||||||||||||| || ||||| ||||| | | ||| | Sbjct 15046 CATGCTTTGGTCGATGAACGCGCCACGGTCGGCCGCCATCTTCAACAA-TGTCTTCTGCG 15104 Query 148114 TCATCTCCCAGGCCGTCTTGTACAGC---CGCTTGATATGATCGGGAATG-CCGTCGATG 148169 || ||||| | || ||||| || ||| | | | | ||||| ||||| | | Sbjct 15105 AAATTTCCCAAACGGTTTTGTAAAGTTCACGC---AGCTCAGCCGGAATCTCCGTC-AGG 15160 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 | || || || || || || | |||| || | | | | | | ||| Sbjct 15161 CTTTGTACTGAACCATTGTTTGCGATGATCTTGTTCTTCGTCGCATTGTTCCAAAGGCCA 15220 Query 148230 AG-CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 || ||| ||| ||| | || || || || || || |||||||| ||||| || Sbjct 15221 AGACTCTG-CAGATCACTCAGCAAATGCTTGTTAACAACGGCGAACTCGCCCGCGAGAAC 15279 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 ||| ||| || | ||| ||| |||||||||| |||||||||| |||| |||||| Sbjct 15280 GCGGCGCGTGTAGATGTTTGACGTGTACGGTTCAAAGCACTCGTTGTTACCCAGAATCTG 15339 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 || || | || || |||||| |||||||| |||||||||||||| ||| | | Sbjct 15340 CGACGTGGAAGCAGTCGGCATGGGCGCTACCAAGAGCGAGTTGCGCAAGCCGTGCTCAAG 15399 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGC---GGCGACGGTGTCACGTTCCACAT 148465 ||||| |||| || || ||||| || | || | || ||| |||||| ||||| Sbjct 15400 GATTTTTTGCTTGAGCGCTGCCCAATCGTATCGCCCGGACGCCGGCGTCACGCCCCACAA 15459 Query 148466 GTCGTACTGCAGAATGCC 148483 || |||| || |||| Sbjct 15460 ATCAAACTGAAGTTTGCC 15477 >seq963 Length=27641 Score = 168 bits (186), Expect = 6e-37 Identities = 359/521 (69%), Gaps = 20/521 (4%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 |||||| || || || |||||||||||||| || || || || | |||||| | ||| Sbjct 16961 GTACTCTCCCACACGCTTCTCAAAAAAGTTGGTCTTCCCTTCGAGCGAAATCAGCTCCAT 17020 Query 120414 AAACTCGAACGGGTTGCTCGCGT--TAAAGTATTTCGGCTGGCCCA---ACTGTACGAGC 120468 | || |||||||||| |||| |||| | ||||| || || | |||| |||| Sbjct 17021 CCAGTCAAACGGGTTGCGGGCGTGGTAAACTTTTTCG--TGCCCGAGGGACTG---GAGC 17075 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGC-GTTCATGCCCAGCA 120526 || ||||| || ||||||||||| || | ||| ||| | | ||| |||||| || | || Sbjct 17076 AGGCGGTCGGCGACAAACTCAATATATTGCGC-CATA-AGTTCGCTGTTCATCCCGATCA 17133 Query 120527 ACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACA 120586 | | ||||| ||| | | ||| |||||||| | || || | ||| | Sbjct 17134 AGTCGCACGGCAGCGCGTCAATAATAAATTCCTTCTCGCACGCAACAGCGCTCGTGATGA 17193 Query 120587 TGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 || ||||| || | | |||| ||| || || || | | | ||| | ||||||| Sbjct 17194 TGTTGAGCACCGTTTCGTTCGGCAGCTTCTG--CGG-GCACATGCTGTACAAGAGGCACG 17250 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| |||||| |||||||| ||||| |||||||| ||||| ||||| || || | Sbjct 17251 CAAAGTCGCAGTGCAGACCCTCGTCTCGCGAAATCAGCTCATTGCTGAACGTGAGTCCAG 17310 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| | || || ||| || ||| || || || | | Sbjct 17311 GCATGAGCCCGCGCTTCTTGAGCCAAAAGATTGCGCAGAAAGAGCCGGAGAAAAAAATTC 17370 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 | || || |||||| ||||||| ||||| || || | | ||| | || ||||| Sbjct 17371 CTTCGACTGCGGCAAACGCGACCAGACGCTCTGCAAAGGATG-CGT-GCGATG-AGATCC 17427 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATC 120867 || ||| ||||||||||||||||| |||||| || ||| Sbjct 17428 ACGTCAAAGCCCACTCGGCCTTTTTCTTCACGCAGGGAATC 17468 >seq2751 Length=18403 Score = 116 bits (128), Expect = 4e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| || ||||||||||| || |||||||| |||||||| || Sbjct 18403 CTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAAT 18344 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| |||||||| | |||||| |||| |||| ||| || || Sbjct 18343 CTTGGCCTTCACATTATCAATCGTGTCGGACGACTCCACCTCGAGCGTGATGGTCTTTCC 18284 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG---GCTTATT 133668 |||||| || || || |||||||||||| ||||||| Sbjct 18283 GGTCAGCGTCTTCACAAAAATCTGCATGCTTGCTTATT 18246 >seq970 Length=23808 Score = 114 bits (126), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || || || || || ||| || |||||| | Sbjct 22527 AAGTGCAAGGTCGACTCCTTCTGGATGTTATAGTCTGACA--GTGTTCGTCCGTCCTCCA 22584 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||||||||| |||| | ||||||||||| || ||||||||||||||||| | Sbjct 22585 GCTGCTTGCCCGCAAAAATCAAGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGAA 22644 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | || ||| || || | |||| || |||| Sbjct 22645 TCTTCGCCTTGACATTATCGATGGTGTCCGAGGACTCGACCTCCAACGTGATTGTCTTGC 22704 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || ||||||||||||||| Sbjct 22705 CCGTGAGGGTCTTGACGAAAATCTGCATG 22733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402587121360